Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2163 ATGAGATTAAGGAAGCGTAAACGATGTTTTCCCTCTTGTTCCTCTCTTCGCAAAgttgatgaggatgagattTATTGGAGACATAGAAAGGAAGATGAAGAGTTGGAATGGGCACCTAATTCCACTCACTTAATATCTCAGTTGACTCAATGTTTTACTAATGCTATGGTTGGATCACGATCATGGATAGGAGGACTCTTTAACCGCACAAACACTAAGCGAAATGACAAATTCGTTGACTATCCTTTGAGTCCTGTTGAGGAGCAAAGACTTCAAAGGCTTCAAGAACGGCTGCAAATGCCTTATGATGAGACTCGCCCCGATCATCAaGAATCACTGAGAGCTTTGTGGCATTGTTCCTTTCCTAATGTTTCTCTGGAAGGCTTAATATCTGACCAATGGAAAGATATGGGATGGCAAGGTCCTAATCCATCGACGGACTTCAGGGGATGTGGCTTCATTTCCCTTGAAAATTTGCTGTTTTTCGCAAGGAAATATCCGGCATCTTTTCACAGGCTGTTGTTGAAGAAAGATGGAAAGAGAGCAACATGGGAATATCCATTTGCTGTTGCTGgcattaatatatcatttatgtTGATACAAATGTTGGATTTGTGCTCAGAAAAGCCACGATGTCTTCCTGGCATGAATTTTGTCAAGTTATTAGGAGAAAATGAAGAAGCATTCGATGAACTATATTGTATAGCTTTTGAGATGACGGATGCGCAATGGCTGGCTATGCATGCTTCCTACATGGATTTTAACGAGGTTCTACAAGCAACACGAATGCAATTGGAGAGAGAGCTATCCTTAGAAGACATCAACAAAATACAAGACCTACCTGCTTACAATCTGTTGTAA 861 0.3937 MRLRKRKRCFPSCSSLRKVDEDEIYWRHRKEDEELEWAPNSTHLISQLTQCFTNAMVGSRSWIGGLFNRTNTKRNDKFVDYPLSPVEEQRLQRLQERLQMPYDETRPDHQESLRALWHCSFPNVSLEGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARKYPASFHRLLLKKDGKRATWEYPFAVAGINISFMLIQMLDLCSEKPRCLPGMNFVKLLGENEEAFDELYCIAFEMTDAQWLAMHASYMDFNEVLQATRMQLERELSLEDINKIQDLPAYNLL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2163 286 ProSiteProfiles ELMO domain profile. 108 269 IPR006816 -
Ssu3g2163 286 Pfam ELMO/CED-12 family 93 258 IPR006816 -
Ssu3g2163 286 PANTHER BNAC05G01970D PROTEIN 53 286 - -
Ssu3g2163 286 PANTHER ENGULFMENT AND CELL MOTILITY 53 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2163 Ssu-Chr3 70481499 70487103 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2163 K23538 - gmx:100811853 570.466