Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2155 ATGGGGTTCCAAGAAAACGGGAATGGGGAAATGGGGTTGTCTGGAATCCCCTTGGGAGCAAAGAACAAGTACAAGAGGATGAACTCTGAGCTTCCTGAGGATAACGATGATGTTTTGCACCAACAGCAACAAGAGGAAAGGAGGAGCAGAATCAGGAAATACGTTCTTGCCTGCGCCATCTTTGCTTCTCTCAACAATGTCCTTCTCGGCTATGATGTAGGTGTCATGAGTGGAGctgttatatttataaaagaagatcTGAAGATAACTGAGGTTCAGGTGGAATTTTTGGTTGGTATTCTTAGCATTATTTCTCTATTTGGTAGCCTTGGTGGTGGAAGAACATCTGATATTATTGGTAGAAAATGGACAATGGCCTTAGCTGCAGTTGTCTTCCAAATGGGTGGACTCACAATGACTCTTGCCCCTTCATATGCAGTACTATTGGTTGGAAGATTTCTAGCTGGGATTGGAATTGGGTTTGGGGTTATGATCTCCCCTATTTATATTGCTGAGATATCACCAAACCAGAATAGAGGCTCTCTCACTGCCTTCCCGgagatttttataaatgtagGAATCATGCTTGGTTATGTGTCAAATTACGCGTTTTCTGGCCTTTCAGCGCACATAAGTTGGAGAGTAATGCTTGCAGTGGGAATTTTGCCCTCAGTGTTCATCGGCTTTGCTCTTTTCATTATTCCTGAGTCACCAAGGTGGTTGGTAATGCAGAACCGAATTGATGAAGCAAGGTCAGTGCTGTTGAAAACAAATGAAGACGAGAAAGAAGTGAAGGAGAGGCTTGCAGAGATACAGCAAGCTGCTGGATTTGCCAATTCTGAGAAGTATGATGAGAAACCGGTGTGGCGCGAGCTGCTatttcctcctcctcctcttcgcCGGATGCTGATTACTGGACTTGGAATCCAGTGTTTCCAACAGATCTCAGGAATTGATGCAACAGTGTATTACAGTCCTGAGATTTTCCAAGCTGCTGGGATTGAGAACAATTCAAAACTTCTAGCTGCTACTGTTGCTGTAGGCATAACAAAgaccatttttattttggtggCAATCATTCTCATTGACAAACTAGGTAGGAGGCCCCTTCTCTTGATAAGCACAATTGGGATGACAGTTTGTTTGTTCTGCATGGGGGCTACACTTTCTTTGTTTGGACAAGGGTCATTTGTGACTGCATTGGCTATTCTGTTTGTTTGTGGGAATGTGGCATTCTTTTCTGTTGGACTAGGCCCTGTGTGCTGGGTTTTGACATCTGAAATCTTCCCTTTAAGAGTGCGTGCTCAAGCATCTGCACTTGGAGCTGTGGGTAATAGGGTCTGCAGTGGCCTTGTAGCCATGTCTTTTCTTTCTGTGTCTGAGGCAATTAGTGTTGCTGGAACGTTCTTTCTGTTTGCTGCTATTTCTGCTCTTGCCATTGCCTTTGTCTTCACACTAGTGCCCGAAACCAAAGGGAAGTCGTTGGAGCAGATAGAGATGATGTTTCAGAATGAGTATGAGAGTCAAGGGAAAGAAATGGAGCTAGGAGATGTTGAACAACTTGTGCAGAACAAAACTggtttaacaaattaa 1593 0.4175 MGFQENGNGEMGLSGIPLGAKNKYKRMNSELPEDNDDVLHQQQQEERRSRIRKYVLACAIFASLNNVLLGYDVGVMSGAVIFIKEDLKITEVQVEFLVGILSIISLFGSLGGGRTSDIIGRKWTMALAAVVFQMGGLTMTLAPSYAVLLVGRFLAGIGIGFGVMISPIYIAEISPNQNRGSLTAFPEIFINVGIMLGYVSNYAFSGLSAHISWRVMLAVGILPSVFIGFALFIIPESPRWLVMQNRIDEARSVLLKTNEDEKEVKERLAEIQQAAGFANSEKYDEKPVWRELLFPPPPLRRMLITGLGIQCFQQISGIDATVYYSPEIFQAAGIENNSKLLAATVAVGITKTIFILVAIILIDKLGRRPLLLISTIGMTVCLFCMGATLSLFGQGSFVTALAILFVCGNVAFFSVGLGPVCWVLTSEIFPLRVRAQASALGAVGNRVCSGLVAMSFLSVSEAISVAGTFFLFAAISALAIAFVFTLVPETKGKSLEQIEMMFQNEYESQGKEMELGDVEQLVQNKTGLTN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2155 530 Coils Coil 254 274 - -
Ssu3g2155 530 PRINTS Sugar transporter signature 66 76 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g2155 530 PRINTS Sugar transporter signature 403 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g2155 530 PRINTS Sugar transporter signature 149 168 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g2155 530 PRINTS Sugar transporter signature 313 323 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g2155 530 PRINTS Sugar transporter signature 426 438 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g2155 530 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 21 514 IPR045262 GO:0015144
Ssu3g2155 530 ProSitePatterns Sugar transport proteins signature 2. 154 179 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu3g2155 530 Pfam Sugar (and other) transporter 58 502 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu3g2155 530 TIGRFAM SP: MFS transporter, sugar porter (SP) family 53 498 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g2155 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 58 491 IPR020846 GO:0022857
Ssu3g2155 530 SUPERFAMILY MFS general substrate transporter 27 499 IPR036259 -
Ssu3g2155 530 ProSitePatterns Sugar transport proteins signature 1. 358 375 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu3g2155 530 ProSitePatterns Sugar transport proteins signature 1. 112 129 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu3g2155 530 Gene3D MFS general substrate transporter like domains 47 506 IPR036259 -
Ssu3g2155 530 PANTHER POLYOL/MONOSACCHARIDE TRANSPORTER 1 21 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2155 Ssu-Chr3 70295096 70297188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2155 84 525 Organic Solute Cotransporters AT2G20780 72.172 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2155 - - gmx:100802411 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2155 3 70295096 70297188 Ssu3g2155 3 70295096 70297188 ECH