Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2016 atGAGAAAGGAGTGTCATCCATTGTTAAGGGGGGGAAAAGGGGATAGCAAATACAAACATGGATTTTCTGCAGCTGAGATGGAGTCACTGGCAAGCATATGTGAGGTTGTGCTGCCTCCTTTGCCGATGGATGCTCTGAATATCAGAAAGGAAGACCAAGCTGATAATGATTCTAGCAAGAGTGTGCAGTCCTTCTGGAAAATTTCTGCTTCTCGCTATCCAATCCCTCatgagGTTGCTGAGATGTTAATGAAGAGGAGCTTAATAGAAGCAGTAACACTGATTAGAGTGGTTTTATGGCTGCTAGCAACACGGTTGGGCACCTTGTTGCTTTGTGGTTTCCTCTGTCTTGGTGAAAAATGGCCCTATGTCAACAACTTCTCAAACATGTCTTTGGAGAATAGAGAAAAGGTTATGCAGAAGTGGCTGAAGCATAGGTTCCTCACACCTATTAGACTGGCATTTGCTTACATCAAAGTCTTGtgcctctttatttttttctcttggGTTGATGAAAATGGTGATAACCCAGCATGGAAAGCCATTGGATATGAGATATCGGATGATGAGAAATTGACCAATGCCTCCAACACTAGGCCCCTTGAAAAGGGGATTATAGAAACCATGCACGAATCTGATTCAACTATTCAACAATCTCTTGCTAAGAAAGGCCTCAATGTCACACTGGACTCCAAAACCAACATCCTCAAAGTCAAATGTGATGCACTAGTTGTTGGGTCTGGTTGTGGTGGAGGTGTTGCAGCTGCTGTTCTTTCAAGTGCTGGCCACAAGGTGGTTGTTCTTGAGAAAGGCAACTATTTTGTTCCTCAGGACTATTCATCTCTAGAAGGGCCTTCCATGAATCAACTATATGAAACTGGAGGGATCCTTGCTTCTGTGGACTCCAGAGTACTGGTTTTGGCAGGATCAACAGTGGGTGGTGGCTCTGCCGTTAATTGGTCAGCCTGCATTAGAACCCCACACAAGGTGCTGAAAGAATGGTCTGAGAACCACAAGCTTCCCTTCTTTTCAAGCCAAGAGTATCTCTCTGCAATGGAAACTGTGTGTGAAAGGATTGGTGTCACAGAAAACTGTACACAAGAGGGATTCCAAAATCAAGTACTAAGAAAAGGGTGTCAAAATCTTGGCCTGAAAGTTGACTATGTGCCAAGAAACTCTTCAGGGAATCACTACTGTGGCTCATGTGGTTATGGTTGTCCAAAAGGAGAGAAACAAGGGACTCAAGCTACATGGCTTGTAGATGCAGTTGACAAAGGTGCAGTAATAATAACAGGATGCAAAGCTGAGAGGTTCTTGTTGGAAAGTAACAAGAATGGAAACGGCAGAAAGAAGAAATGCTTGGGAGTGCTGGCAAAAGCACTAAGCAACAGAGTCACAATGAAGCTACAAATTGAGGCCAAAGTGACAATTTCTGCAGGTGGGGCACTTCTGACACCCCCTTTGCTAATCTCTAGTggactaaaaaataagaatattggTGAGAACCTTCATCTCCACCCTGTCCTAATGACATGGGGATACTTCCCAGAATCAAATTCAGAACTCAAAGGTAAAGTCTATGAGGGGGGTATAATCACATCGGTCCATAAAGTGCCATCAGCAGACTCCAAATCAGATTCAAGAGCGATAATTGAAACCCCTTTGCTAGGACCAGCATCCTTTGCGTCACTGTGTCCTTGGGAGTCAGGACAGGACTTCAAAGAAAGAATGCTGAATTACCCAAGAACTGCACATTTGATCACAATCATAAGAGACATGGCTTGTGGAAGGGTAACAACAGAAGGAAGGATCAGCtacaaaatgaatgaaattgacAGAGAGAACATGAAGGCTGGCTTGCAACAAGCACTGAAAATCCTAACAGCAGCAGGAGCAGTTGAGGTAGGCACACACAGAAGTGATGGTCAGAGACTGAGGTGCAGTGGGATAAGCGAAAATGAAGGGCAAGAGTTCTTGGACAGTGTGTATCCAGTGGAGGGGGCACTTTCACCAGGTGAGAATTGGAACATATATTGTTCTGCACATCAAATGGGGAGCTGCAGAATGGGGGTCAATGAAAAAGAAGGTGCagttgatgaaaatggagaGACATGGGAGGCTGAAAGCTTGTTTGTTTGTGATGCTAGTGTGCTTCCAACTGCAGTTGGTGTCAATCCCATGATCACAATCCAATCAACTGCATACTGTATCTCTAATAGAATAGCAGATTATCTTAGAAGGGGTCAAATCTCAGAAGTTCGCTGA 2265 0.4278 MRKECHPLLRGGKGDSKYKHGFSAAEMESLASICEVVLPPLPMDALNIRKEDQADNDSSKSVQSFWKISASRYPIPHEVAEMLMKRSLIEAVTLIRVVLWLLATRLGTLLLCGFLCLGEKWPYVNNFSNMSLENREKVMQKWLKHRFLTPIRLAFAYIKVLCLFIFFSWVDENGDNPAWKAIGYEISDDEKLTNASNTRPLEKGIIETMHESDSTIQQSLAKKGLNVTLDSKTNILKVKCDALVVGSGCGGGVAAAVLSSAGHKVVVLEKGNYFVPQDYSSLEGPSMNQLYETGGILASVDSRVLVLAGSTVGGGSAVNWSACIRTPHKVLKEWSENHKLPFFSSQEYLSAMETVCERIGVTENCTQEGFQNQVLRKGCQNLGLKVDYVPRNSSGNHYCGSCGYGCPKGEKQGTQATWLVDAVDKGAVIITGCKAERFLLESNKNGNGRKKKCLGVLAKALSNRVTMKLQIEAKVTISAGGALLTPPLLISSGLKNKNIGENLHLHPVLMTWGYFPESNSELKGKVYEGGIITSVHKVPSADSKSDSRAIIETPLLGPASFASLCPWESGQDFKERMLNYPRTAHLITIIRDMACGRVTTEGRISYKMNEIDRENMKAGLQQALKILTAAGAVEVGTHRSDGQRLRCSGISENEGQEFLDSVYPVEGALSPGENWNIYCSAHQMGSCRMGVNEKEGAVDENGETWEAESLFVCDASVLPTAVGVNPMITIQSTAYCISNRIADYLRRGQISEVR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2016 754 PANTHER LONG-CHAIN-ALCOHOL OXIDASE 1 747 - -
Ssu3g2016 754 Pfam GMC oxidoreductase 603 736 IPR007867 GO:0016614
Ssu3g2016 754 Gene3D - 225 543 IPR036188 -
Ssu3g2016 754 Gene3D - 673 750 IPR036188 -
Ssu3g2016 754 PANTHER LONG-CHAIN-ALCOHOL OXIDASE 1 747 - -
Ssu3g2016 754 PIRSF Lg_Ch_AO 8 750 IPR012400 GO:0046577
Ssu3g2016 754 SUPERFAMILY FAD/NAD(P)-binding domain 239 748 IPR036188 -
Ssu3g2016 754 Pfam GMC oxidoreductase 241 508 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2016 Ssu-Chr3 65867501 65871941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2016 81 748 Acyl Lipid Metabolism Gene Families AT3G23410 63.744 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2016 K17756 - gmx:100776182 1347.03