Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1998 ATGGCCACTCGCGTGTTGCTCGGAGCAATCAAGAAACGCACCGTTTCGTTCCCCGTATTCCCCGGCACCTCCATTTATCGACACGGTAGCACGCTTGTTGTGGCGGAACACGAAGGTGGTGTTATCAAACCACCTTCTCTCTCTGCACTTGCGGCTGCCACGTGTCTTCCCGATCGTGACTCTTCCGTTTCTGTTCTATTGGCCGGTTCGGGTCCTTCTCTTCATCAAGCTGCTTCACATGCTGCTTCGTGCCACCCTTCAATCTCAAAGGTGCTCGTGGCAGATTCGGATAAATTCAAGAACCCTCTGGCGGAGCCCTGGGCTAAATTAGTCCATTTGGTTCAGCAGAGTGGTGGTTACTCTCACATAATTGCTGCTGCAAATTCTTTTGGGAAAAATGTCATGCCGCGTGCAGCTGCCCTTTTAGATGTTTCTCCAATTACTGATGTTATGGGCATTTCTGATTCCAATACTTTTGTGAGGCCAATATATGCTGGAAATGCACTTTGTACTGTGCGATATACTGGTGCCAATCCTTGTATATTAACAATTAGATCCacatcttttccttttcctcagAAGTCAGTTGACTCAAAATCTAATGAGGCTTCAATATCTCAGGTTGACCTTTCAACCTTTGATGAAGATGTGGGCAAGTCTAGATATTTATCTCAAACTACCCAGGATGATGAACGACCAGATCTTGGGAATGCACGAATTGTAGTTACTGGTGGCCGAGCACTAAAGAGCGCTGAGAACTTTAAATTGATAGAAGAGCTAGCCAGGAGACTTGGTGCTGCTGTCGGTGCCACTCGTGCTGCTGTTGATGCAGGATTTGTTCCTAATGATCTCCAGgTTGGGCAAACTGGAAAGATTGTTGCTCCTGAACTCTATATGGCTTTTGGTGTATCTGGAGCTATTCAACACTTGGCAGGGATGAGGGATTCTAAGGTCATTGTTGCTGTGAACAATGATGCTGATGCTCCAATATTTCAGGTAGCTGATTATGGACTTGTAGGAGATCTGTTTGAGGTGATACCAGAGTTACTAGAAAAACTCcctgagaaaaaataa 1074 0.4451 MATRVLLGAIKKRTVSFPVFPGTSIYRHGSTLVVAEHEGGVIKPPSLSALAAATCLPDRDSSVSVLLAGSGPSLHQAASHAASCHPSISKVLVADSDKFKNPLAEPWAKLVHLVQQSGGYSHIIAAANSFGKNVMPRAAALLDVSPITDVMGISDSNTFVRPIYAGNALCTVRYTGANPCILTIRSTSFPFPQKSVDSKSNEASISQVDLSTFDEDVGKSRYLSQTTQDDERPDLGNARIVVTGGRALKSAENFKLIEELARRLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNNDADAPIFQVADYGLVGDLFEVIPELLEKLPEKK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1998 357 CDD ETF_alpha 30 209 IPR033947 -
Ssu3g1998 357 Pfam Electron transfer flavoprotein FAD-binding domain 234 314 IPR014731 -
Ssu3g1998 357 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 297 323 IPR018206 -
Ssu3g1998 357 PIRSF Electra_flavoP_a 28 357 IPR001308 GO:0009055|GO:0050660
Ssu3g1998 357 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 17 355 IPR001308 GO:0009055|GO:0050660
Ssu3g1998 357 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 30 206 - -
Ssu3g1998 357 Gene3D - 229 356 - -
Ssu3g1998 357 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 17 355 - -
Ssu3g1998 357 SUPERFAMILY DHS-like NAD/FAD-binding domain 233 353 IPR029035 -
Ssu3g1998 357 SMART ETF_2 31 217 IPR014730 -
Ssu3g1998 357 Pfam Electron transfer flavoprotein domain 31 195 IPR014730 -
Ssu3g1998 357 Gene3D HUPs 30 228 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1998 Ssu-Chr3 65327154 65332103 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1998 K03522 - gmx:100793964 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1998 3 65327154 65332103 Ssu3g1998 3 65327154 65332103 ECH