Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1996 ATGATTTCTGCAACCAAACTCAAATCCGTCGATTTTTACAGGAAAATCCCGAGAGATTTGACTGAGGCGTCGTTATCAGGAGCGGGATTATCCATAGTGGCAGCTCTCTGCATGATGTTTTTATTTGGAATGGAACTAAGTAATTATTTGGCTGTTAGCACCTCCACATCTGTGATTGTTGACAAGAGTTCTGATGGTGACTACTTACGTATCGATTTCAATATCAGttttcctGCACTCTCATGTGAGTTTGCATCAGTTGATGTGAGTGATGTGCTGGGAACAAACAGGCTCAATATAACAAAAACAGTTCGTAAATTTtctattgattcaaatttaagacCCACTGGCGCTGAGTTTCATTCAGGTACAGTTGCAAATGCTGTGAAGCATGATGATGAAGTAGATGAAGAATCTGTTGAAGGTTCTTTTTCACTCACAGCacataattttgacaaatatgtTCATCAGTTTCCAATTACAGCTGTAAATTTTTATGCACCTTGGTGTTCCTGGTGTCAACGTTTGAAACCTTCGTGGGAGAAGGCGgctaaaattatgaaagagagatatGACCCAGAAATAGATGGGCGTATTCTTTTGGCAAAGGTAGATTGCACTCAAGAAGGAGATTTATGCAGGAGGAATCACATACAAGGGTATCCGTCTATTCGAATCTTTCGTAAAGGAAGTGATGTCAGAAGTGAACATGGGCATCATGAACATGAGTCCTATTATGGAGATCGTGATACAGAAAGCCTAGTCAAGTTTATGGAGAATTTAGTCACATCTCTCCCAACAGAATCTCAAAAGCTAGCTCTGGAGGATAAATCTAATGCTGCAGAGAATGCAAAAAGGCCAGCACCAACAGCAGGTGGATGTAGAATAGAGGGATATGTGCGTGTGAAAAAGGTTCCAGGAAATTTGATCATCTCAGCTAGATCAGACGCCCATTCCTTTGATGCTTCTCAAATGAACATGTCACATGTCATAAACAACTTGTCTTTTGGAAAGAAAGTGACACCTAGGGCCATGAGTGATGTGCAGCTCTTGATACCATACATAGGTAGCAGCCATGACAGGCTCAATGGCCGGTCATTCACCAATACTCGTGATTTAGGAGCAAATGTTACTATAGAGCATTATATTCAGATAGTTAAAACAGAGGTAATGAATAGAAAaggttataaattaattgaggAGTACGAGTACACAGCGCACAGCAGTGTGGCACACAGTGTAGACATTCCTGTTGCGAAGTTTCATCTTGAGCTCTCCCCCATGCAGGTCTTAATAACAGAAAACCAGAAGTCATTTTCACATTTTGTTACAAATGTCTGTGCCATTATTGGGGGTGTTTTCACGGTGGCTGGAATTTTGGACTCGATTCTGCACACCACTATTAGAATAATGAAAAAGGTTGAGCTTGGCAAAAATGTTTGA 1443 0.3881 MISATKLKSVDFYRKIPRDLTEASLSGAGLSIVAALCMMFLFGMELSNYLAVSTSTSVIVDKSSDGDYLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKFSIDSNLRPTGAEFHSGTVANAVKHDDEVDEESVEGSFSLTAHNFDKYVHQFPITAVNFYAPWCSWCQRLKPSWEKAAKIMKERYDPEIDGRILLAKVDCTQEGDLCRRNHIQGYPSIRIFRKGSDVRSEHGHHEHESYYGDRDTESLVKFMENLVTSLPTESQKLALEDKSNAAENAKRPAPTAGGCRIEGYVRVKKVPGNLIISARSDAHSFDASQMNMSHVINNLSFGKKVTPRAMSDVQLLIPYIGSSHDRLNGRSFTNTRDLGANVTIEHYIQIVKTEVMNRKGYKLIEEYEYTAHSSVAHSVDIPVAKFHLELSPMQVLITENQKSFSHFVTNVCAIIGGVFTVAGILDSILHTTIRIMKKVELGKNV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1996 480 Gene3D Glutaredoxin 129 289 - -
Ssu3g1996 480 CDD PDI_a_family 146 258 - -
Ssu3g1996 480 Pfam Thioredoxin 145 243 IPR013766 -
Ssu3g1996 480 SUPERFAMILY Thioredoxin-like 145 261 IPR036249 -
Ssu3g1996 480 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 479 - -
Ssu3g1996 480 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Ssu3g1996 480 ProSiteProfiles Thioredoxin domain profile. 120 263 IPR013766 -
Ssu3g1996 480 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 479 IPR045888 -
Ssu3g1996 480 Pfam Endoplasmic reticulum vesicle transporter 289 461 IPR012936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1996 Ssu-Chr3 65298373 65305872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1996 - - gmx:100787595 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1996 3 65298373 65305872 Ssu3g1996 3 65298373 65305872 ECH