Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1994 ATGTGGAGAGATCCTGGAGCTCCCGCTGATTCTTTTTATGAAATCCGTCCAGAGTGCACTGATGTTCCCAAGTCTCGATTTAGGATCAAGGCTGGCAAAACATTAAGTGCAAGAAAATGGCATGCTGCATTTTCTCCAGAAGGGTATTTGGATATAGGCAAGACTCTAAGTCGAATCCACCGTGGGgGAATACATCCATCAATTAGAGGAGAAGTTTGGGAATTTTTACTTGGTTCCTATGATCCCAAGAGTACATTTGAAGAAAGAGATGAGATAAGACAACGTCGGAGGGAGCAATATTCTACATGGAAGGAAGAATGTCGTAAATTATTTCCTCTCATAGGAAGTGGTAAATTTATCACAGCACCTGTAATTACTGAAGATGGTACACCAATTCAAGATCCATTAGTTTTGTTAGAAAATAATCCAGAGAATGGAGTTATTAATGTGCCCCAAGAGAATACAAATGGTAGCATTAATGCTATAAATAACTTAGAAAAAATGACAGACAAAGGAGTAATTCAGTGGATGTTAACGCTTCATCAGATAGGTCTTGATGTGATTCGCACTGATAGAACATTggttttttatgaaaagaaagagaactTGTCAAAACTATGGGATATTCTCGCTGTTTATGCTCGAATAGATTCAGATGTTGGTTATGGTCAAGGAATGAGTGACCTGTGCTCTCCTATGATAATACTTCTTGATGATGAAGCTGATGCATTTTGGTGCTTTGAGCGTTTGATGCGTAAACTAcgAGGGAATTTTAGATGCACTGATAACTCTGTTGGCGTCGAAGCTCAACTAAGTAATTTGGCTACAATCACTCAAGTAATTGATCCAAAACTTCATCAAcatatagATAATCTTGGTGGAGGTGACTATCTATTTGCTTTTCGGATGATAATGGTTCTATTTCGACGAGAATTCTCCTTTTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCCGACTTATTTTGGATCTATGAGGATGCTGATGACAAATCTGAGGAATCTAAAGGAAGATTAAAGTCATTACGTCACTATGGGAAgtatgagagagaaaatatgaaaaatggaGCAAAGAATGGTGAAGATCCTCCTCTTCCCATATCTGTTTTCCTTGTTGCTAGtgtgttgaaagaaaaaagtgcAATATTACTCCAACAAGCACGAGGCTTGGATGATGTTGTCAAGATATTGAATGATGTAAATGGAAATCTTGATGCCAAGAAAGCTTGTGTGGCTGCACTAAAACTTCacaagaaatatttgaaaaagGCTAAGAATCCCTAA 1320 0.3561 MWRDPGAPADSFYEIRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGSYDPKSTFEERDEIRQRRREQYSTWKEECRKLFPLIGSGKFITAPVITEDGTPIQDPLVLLENNPENGVINVPQENTNGSINAINNLEKMTDKGVIQWMLTLHQIGLDVIRTDRTLVFYEKKENLSKLWDILAVYARIDSDVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRKLRGNFRCTDNSVGVEAQLSNLATITQVIDPKLHQHIDNLGGGDYLFAFRMIMVLFRREFSFCDSLYLWEMMWALEYDPDLFWIYEDADDKSEESKGRLKSLRHYGKYERENMKNGAKNGEDPPLPISVFLVASVLKEKSAILLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKAKNP 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1994 439 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 266 432 IPR035969 -
Ssu3g1994 439 Pfam Rab-GTPase-TBC domain 163 326 IPR000195 -
Ssu3g1994 439 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 439 - -
Ssu3g1994 439 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 439 - -
Ssu3g1994 439 ProSiteProfiles TBC/rab GAP domain profile. 63 328 IPR000195 -
Ssu3g1994 439 Gene3D - 264 438 - -
Ssu3g1994 439 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 288 IPR035969 -
Ssu3g1994 439 SMART tbc_4 60 351 IPR000195 -
Ssu3g1994 439 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 160 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1994 Ssu-Chr3 65263446 65270854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1994 - - gmx:100790955 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1994 3 65263446 65270854 Ssu3g1994 3 65263446 65270854 ECH