Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1987 ATGGTTCGTGGAATAGTGTTCCTGGATTCAGATTTTACATATCTTGGTCAACTGATAGATGAAGAATCCGATGACTTTGCAATTAAGCCTACGAGGACCAATAGTCTGAAGAAGGCCGCTTCGAGCAAGAAGCCTTCAAGATCCAAATCAATTTCCTCTCAAgGAAGTGAAGGCATTGACAAGATTTTCTTTCCTCAGAAGCTCAGCTTAAACGGTAGCGTTTGTAGCCAAGGACTCTCTCCATTATCAAACCTAATAAATGAAAGTCCACGCAAAACTATGGAAAAAACATTAACTTTGCTTGAGGAAGCAGTTGCTGATTCGCAGGCTAAGATTAATGCTTTGATCTCTGATATTGGTACTACTGAGTCTTTTACTGTTGTCAAACAGCCAAGTCAAAAGATTGAGTCAATGCAGGGTTTAGTGGTGCAACTGCCGAACCAACTTTAA 450 0.4022 MVRGIVFLDSDFTYLGQLIDEESDDFAIKPTRTNSLKKAASSKKPSRSKSISSQGSEGIDKIFFPQKLSLNGSVCSQGLSPLSNLINESPRKTMEKTLTLLEEAVADSQAKINALISDIGTTESFTVVKQPSQKIESMQGLVVQLPNQL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1987 149 PANTHER UNCHARACTERIZED 35 148 IPR026728 -
Ssu3g1987 149 Coils Coil 91 111 - -
Ssu3g1987 149 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 35 148 - -
Ssu3g1987 149 MobiDBLite consensus disorder prediction 34 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1987 Ssu-Chr3 65078248 65083359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1987 - - lja:Lj3g3v1011180.1 133.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1987 3 65078248 65083359 Ssu3g1987 3 65078248 65083359 ECH