Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1985 ATGTTGGTGCAGATATCACCGAGTTTGAGGCATGTCACCGTGCTTCCGGGAAAAGGGTTGAAGGAATTTATCAAAGTGAAGGTTGCATCAAGGAGGCTTTCTTATCGGATGCTCTTCTATTCACTCTTGTTCTTCACATTTCTTCTTAGGTTTGTGTTTGTTTTGACAGCAGTGGATGGCATTGATGGAGAAAACAAGTGCTCTTCCATAGgTTGCCTGGGAAAAAAATTGAGGCCAAAGATTTTGGGTAGAAGTCTTGAATCAAATGTCCCAGAAGTGATATACGGAATATTAGATCAACCCCTTGGCAAAGATGAATTAGAGGGAAGGTCTGATATTCCTCAGACGTTAGAAGAGTTCATGGCCCAAATGAAGGAAGGAGGATATGATGCCAAGACATTTGCACTTAAACTACGAGAAATGGTAACGCTTATGGAACAAAGGACCAGGGAAGCCAAAATCCAAGAATATCTATATCGTCATGTAGCATCAAGCAGCATACCCAAACAGCTTCACTGCCTTGGCTTGAGGCTGGCCAATGAGCACACCAACAATGCAGCAGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCCCTGGTTGATAACAACTACTTTCACTTTGTCCTTGCCTCAGACAATGTGCTTGCCGCCTCTGTGGTTGCAAAATCACTAGTTCGCAACAGTTTGCGACCTCAGAAAGTTGTTCTACACATAATTACAGATAGAAAGACTTACTATCCAATGCAGGCTTGGTTCTCCTTGCACCCTTTATCACCTGCCATAATTGAGGTCAAGGCATTGCACCACTTTGATTGGCTTACAAAGGGAAAGGTGCCTGTGCTGGAAGCAATGGAAAAAGATCAAAATGTACGATCGCAGTTTAGAGGGGGTTCATCAGCTATAGTTACAAATACTACTGAGAAACCGAATGTAATTGCCGCAAAACTGCAAGCACTTAGTCCTAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCTGAGTTGTTTTCAAGTCTTAGTAAGGTGGTCTTCCTCGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTGAATGGAAAAGTCAATGGAGCAGTAGAAACATGCAGTGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCTCACCCTTTAATATCCCAAAAATTTGATCCCAATGAGTGTGCTTGGGCTTATGGCATGAACATTTTCGACCTCGATGCTTGGAGGAAGACCAATATAAGCTCTACATACCATTACTGGGTTGAGCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCTCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACTTGTTGGGATTGGGATATCAGGAAAGTACAAGTTTTGCTAATGCTGAGAGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCCTTTCCCCATCTAAGGCCATTGTGGACCAAGTACATTGATTTTTCAGATTACTTCATAAAGAGCTGTCACATTAGGGCATTGTGA 1602 0.4251 MLVQISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGENKCSSIGCLGKKLRPKILGRSLESNVPEVIYGILDQPLGKDELEGRSDIPQTLEEFMAQMKEGGYDAKTFALKLREMVTLMEQRTREAKIQEYLYRHVASSSIPKQLHCLGLRLANEHTNNAAARLQLPSAELVPALVDNNYFHFVLASDNVLAASVVAKSLVRNSLRPQKVVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWLTKGKVPVLEAMEKDQNVRSQFRGGSSAIVTNTTEKPNVIAAKLQALSPKYNSVMNHIRIHLPELFSSLSKVVFLDDDIVVQTDLSPLWDIDLNGKVNGAVETCSGEDKFVMSKRLKSYLNFSHPLISQKFDPNECAWAYGMNIFDLDAWRKTNISSTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHLLGLGYQESTSFANAESAGVIHFNGRAKPWLDIAFPHLRPLWTKYIDFSDYFIKSCHIRAL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1985 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Ssu3g1985 533 Pfam Glycosyl transferase family 8 203 506 IPR002495 GO:0016757
Ssu3g1985 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 524 IPR029044 -
Ssu3g1985 533 CDD GT8_like_1 207 519 - -
Ssu3g1985 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Ssu3g1985 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1985 Ssu-Chr3 65049945 65052720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1985 1 532 Glycosyltransferase AT5G54690 80.337 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1985 K20867 - gmx:100777811 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1985 3 65049945 65052720 Ssu3g1985 3 65049945 65052720 ECH
Ssu8g1027 8 17667924 17670741 Ssu3g1985 3 65049945 65052720 PCT