Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1979 ATGACTAGTTCTAAGAAGCTCGAAGTTCAAACAGATGATCAAACTCCACATAAATGGTGTACTCCATTGGGAGAAGAGGTTTTTAAGAGATTCTTCAGCCAGGCTAATCCAACAGTGCACAAGATTTTTGGGGATGGGTCACTTTTCAGTCCAATGTTGTTTGGAAAGTTCTTTGATCCTTCTGATGCCTTCCCTCTGTGGGAGTTTGAGTCAGATATCTTGCTATGTCATTTAAGGAGCTCCAACCAAAACACTGTGGATTGGTATCAAACAGATGAAGGTTACATGTTAAAGGCAGAAATAGCAGGAACTGGGATAAGTAACATTCAAGTCCATGTTGATAACGGGAAGGTTGTGGAAATTAGTGGACAGTGGAAGCCGCAAAGAGACTCAAAGGCAAATGACTGGAGGTGTGGCCATTGGTGGGAATATGGATATGTTCGAAGGCTAGAGATGCCAGAGGATGCAGATTTGAAGATTATTGAAGCGCACATATGTAATAGCAGATTTTTGGAAGTACGAATACCAAAGTGCCCTGAGGGAAAGGATGTGGTTTCAAGCAGTGTAAATTTAAGAGGATAG 582 0.4175 MTSSKKLEVQTDDQTPHKWCTPLGEEVFKRFFSQANPTVHKIFGDGSLFSPMLFGKFFDPSDAFPLWEFESDILLCHLRSSNQNTVDWYQTDEGYMLKAEIAGTGISNIQVHVDNGKVVEISGQWKPQRDSKANDWRCGHWWEYGYVRRLEMPEDADLKIIEAHICNSRFLEVRIPKCPEGKDVVSSSVNLRG 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1979 193 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 1 180 - -
Ssu3g1979 193 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 77 192 IPR002068 -
Ssu3g1979 193 Pfam Hsp20/alpha crystallin family 87 183 IPR002068 -
Ssu3g1979 193 Gene3D - 25 187 IPR008978 -
Ssu3g1979 193 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 1 180 - -
Ssu3g1979 193 SUPERFAMILY HSP20-like chaperones 51 182 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1979 Ssu-Chr3 64937256 64938228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1979 - - lang:109351887 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1979 3 64937256 64938228 Ssu3g1979 3 64937256 64938228 ECH