Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1976 ATGGAGGAAGTGCTGAAAATGGTGAAAAGCAATGAACAAGTTGTTCCTAGAGCTAAATATTGTGTTACAGGTTCCACAGGGTATATCGGTTCATGGCTGGTGGAGGCTCTTCTTGAAAGGGGCTGCATGGTTCATGCCACCGTTAGAGATCCTGCAAAGTCATTGCACCTTCTGTCTTTGTGGAAGGGTGGCGACCAACTAAGATTTTTCCAAGCGGATTTAAATGAAGAAGGAAGCTTTGATGAGGCTGTAGAAGGATGTGTTGGTGTGTTCCATGTTGCTGCTTCAATGGAATTCAATGTTTCTGAGAAACAAAACAATGAGGCTTTTGGTCAAGCAAATATAATTGACCCTGCAATCAAAGGAACCATAAACCTTCTCAAGTCTTGTTTGAAATCCAATTCTGTGAGAAGGGTTGTCTTCACATCTTCCATAAGTACCATCACTGCCAAAGACAGCAATGGAAAGTGGAAACCTATTGTTGATGAATCTTGCCAAATTCAACCTGACAATGTAAGGAACATACAAGCAAGTGGATGGGTTTATGCACTTTCAAAGCTTCTCACAGAAGAAGCAGCATTTCAATTTGCAAAAGAGAATGGCATTGATCTTGTGTCAGTCATAACAAGCACTGTTGCAGGCCCATTCTTCACTGCTAATGTCCCAACAAGTGTTAAAGTTCTACTGTCACCATTAACAGGTGAAGCAGAGTACTTCAAGATATTATCTGCTGTAAATGCACTAATGGGGTCAATTGCTTTAGTTCACATTGAAGATGTATGCAGTGCTCACATATTCCTAATGGAGCATGCTAAAGCAGAAGGCCGATACATATGCAGCAGCCAAAGTTGTACATTGTCTAACTTGGCTACCCTTCTTTCCAAAGTGTATTCATGTTCAAAAATCTACAGGAAGACCGAGGAAAATTATGACAAAGTTCCTTCTGAGATTTCATCAAAGAAGATAGAAGATTTGGGGTTTAGTTACAAGCATGAccttgaatatataatttatcaaacaattatgtGTTGCCTAGACTATGGTTATTTACCTGCTGTTTAG 1062 0.3927 MEEVLKMVKSNEQVVPRAKYCVTGSTGYIGSWLVEALLERGCMVHATVRDPAKSLHLLSLWKGGDQLRFFQADLNEEGSFDEAVEGCVGVFHVAASMEFNVSEKQNNEAFGQANIIDPAIKGTINLLKSCLKSNSVRRVVFTSSISTITAKDSNGKWKPIVDESCQIQPDNVRNIQASGWVYALSKLLTEEAAFQFAKENGIDLVSVITSTVAGPFFTANVPTSVKVLLSPLTGEAEYFKILSAVNALMGSIALVHIEDVCSAHIFLMEHAKAEGRYICSSQSCTLSNLATLLSKVYSCSKIYRKTEENYDKVPSEISSKKIEDLGFSYKHDLEYIIYQTIMCCLDYGYLPAV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1976 353 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 16 341 - -
Ssu3g1976 353 CDD FR_SDR_e 20 327 - -
Ssu3g1976 353 Gene3D - 10 352 - -
Ssu3g1976 353 Pfam NAD dependent epimerase/dehydratase family 21 273 IPR001509 -
Ssu3g1976 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 341 IPR036291 -
Ssu3g1976 353 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 16 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1976 Ssu-Chr3 64875205 64879013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1976 18 341 Miscellaneous Gene Families AT4G27250 56.269 1.04e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1976 - - gmx:100787267 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1976 3 64875205 64879013 Ssu3g1976 3 64875205 64879013 ECH