Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1945 ATGTTGAGCTTGTATGAAGCAGCCCAACTAAGACTTCATGGAGAGGAGATACTTGAAGAAGCACATAATTTCGCTCTCATTCAGTTAACCAAGTCCATAACCACTCAATTAAGCCCTTCTCTTGCTGCACAAGTGCATCATAGCTTAAGACAATCACTTCGTAAGGGAATACCTAGGCTAGAGGCAAGATATTATATGTCTTTCTACCAAGAAGATCCTTCCCATGATGAAAATTTGTTAACATTTGCAAAACTAGATTTTAATATGCTGCAGGAGCTACATCAAAAAGAAGTTAGCAATGTTACCAAGTGGTGGGTTAACGATTTAAATGTCTCAACAAAATTGCCGTTTGTACGAGATAGGATTGTAGAAGGTTGCTTTTGGATTTTGGGAGTCTACTATGAGCCACATTATTCTATTGCTAGAAAGATAACGACAAAAGTAATTGCTCTATGTTCCATCATTGATGACCTGTATGATGCCTATGGAACCATTGACGAACTTCAGCTTTTCACCAATGCAATTGAGAGGTTAGGCATATCAAAATGA 549 0.3789 MLSLYEAAQLRLHGEEILEEAHNFALIQLTKSITTQLSPSLAAQVHHSLRQSLRKGIPRLEARYYMSFYQEDPSHDENLLTFAKLDFNMLQELHQKEVSNVTKWWVNDLNVSTKLPFVRDRIVEGCFWILGVYYEPHYSIARKITTKVIALCSIIDDLYDAYGTIDELQLFTNAIERLGISK 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1945 182 PANTHER TERPENE SYNTHASE 2-RELATED 1 181 - -
Ssu3g1945 182 Pfam Terpene synthase family, metal binding domain 80 179 IPR005630 GO:0000287|GO:0010333|GO:0016829
Ssu3g1945 182 SUPERFAMILY Terpenoid synthases 75 181 IPR008949 -
Ssu3g1945 182 Gene3D - 1 74 IPR036965 GO:0010333|GO:0016829
Ssu3g1945 182 Gene3D Farnesyl Diphosphate Synthase 75 180 IPR008949 -
Ssu3g1945 182 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 1 75 IPR008930 -
Ssu3g1945 182 PANTHER OS04G0344100 PROTEIN-RELATED 1 181 - -
Ssu3g1945 182 Pfam Terpene synthase, N-terminal domain 1 49 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1945 Ssu-Chr3 61961009 61961656 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1945 K15803 - gmx:100802427 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1945 3 61961009 61961656 Ssu3g1945 3 61961009 61961656 ECH