Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1940 ATGAGGATCTGTATTATTTCTCTTACTCTTTTCCTCATAATAACCCAACTCCTTGGGAGGGCAGAATCAATAAGCAGAGCAGATTTTCCAAAGGGGTTTATCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAAGGAGCTGTTGATGAAGGCAATAAAGGAGATAGTATATGGGATACTTTCTCAAGGATACCAGGGAGAATTGTGGACTTCAGTAATGCAGACATGGCAGTGGATCAATATCACCGATTTCAGAATGATATAAATTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCGAGAATTTTCCCAAATGGAACAGGGGAACCCAATATAGAGGGAATAACATATTACAACAGCCTCATTGATGCTTTACTTGAAAAAGGAATCCAGCCTTTTGTAACACTATATCATTGGGATCTTCCACAGATGCTAGAAGATAAATATGAAGGATGGTTAAGCACACAAATCATAAAAGATTTCGAGCATTATGCCTATACATGCTTCCAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAGCCTCATAACTTTGCACTCCATGGTTATGATTTAGGCATTCAAGCCCCAGGAAGATGTTCCCTTCTAGGTCGTCTTCTATGTAAGAAGGGAAAATCATCCACTGAGCCATACATTGTTGCTCATAACATTCTCTTATCACATGCTGCTGCCTATAGAAGCTACCAACTACATTTCAAGGAACGACAAGGAGGTCAAATAGGAATAGCACTAGATGTCATTTGGTATGAACCCATAACAGAACTTGACGAAGACAGAGATGCAGCAGCCAGAGCTATGGACTTTTCACTTGGATGGTTCCTTGACCCGCTCTTCTTTGGAAAATATCCTCTCTCAATGAAAAAACTAGTAGCCGAGAGATTGCCAGAGATTTCTGATGCAACCTCAAACTTCCTTGTGGGATCTTTGGATTTTATTGGCATAAATCACTACACCTCAGTGTATACTCGTAACGACAGGACTAGGATTCGTAAACTGGTAATGCAGGATGCTGCTTCTGATGCTGCTGTCATTACAACCGCATACCGAAGAGGCGCTGCAATTGGAGAAAAGGCAGCTTCAAGTTGGCTGCACATTGTCCCATGGGGCATCCAAAAGTTGGTAAAACATGTGAAAGGCAAATATGGGAATACGCCAGTAATTATAACAGAGAATGGAATGGATGACCCAAGCAGACCCTTTATGACCTTAAAAAAGGCCTTAAAGGATGACAAGAGGATAAGATACCATAGAGACTATCTCTCAAACCTATCTGCTGCTATAAGGCAAGATGATTGTAATGTACGTGGTTACTTTGTATGGTCATTGCTTGACAATTGGGAGTGGAACATGGGATACACTGTACGCTTTGGACTCTACTATGTGGATTTCAGGAACAATCTAACTAGGATACCAAAAGATTCGGTGCAATGGTTCAAAAATGTACTCAGaataaaaactgcaaagagtggtgaaatttga 1527 0.4001 MRICIISLTLFLIITQLLGRAESISRADFPKGFIFGTASSAHQFEGAVDEGNKGDSIWDTFSRIPGRIVDFSNADMAVDQYHRFQNDINLMKDLGMDSYRFSISWPRIFPNGTGEPNIEGITYYNSLIDALLEKGIQPFVTLYHWDLPQMLEDKYEGWLSTQIIKDFEHYAYTCFQAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGRLLCKKGKSSTEPYIVAHNILLSHAAAYRSYQLHFKERQGGQIGIALDVIWYEPITELDEDRDAAARAMDFSLGWFLDPLFFGKYPLSMKKLVAERLPEISDATSNFLVGSLDFIGINHYTSVYTRNDRTRIRKLVMQDAASDAAVITTAYRRGAAIGEKAASSWLHIVPWGIQKLVKHVKGKYGNTPVIITENGMDDPSRPFMTLKKALKDDKRIRYHRDYLSNLSAAIRQDDCNVRGYFVWSLLDNWEWNMGYTVRFGLYYVDFRNNLTRIPKDSVQWFKNVLRIKTAKSGEI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1940 508 PRINTS Glycosyl hydrolase family 1 signature 402 410 IPR001360 GO:0004553|GO:0005975
Ssu3g1940 508 PRINTS Glycosyl hydrolase family 1 signature 447 464 IPR001360 GO:0004553|GO:0005975
Ssu3g1940 508 PRINTS Glycosyl hydrolase family 1 signature 324 338 IPR001360 GO:0004553|GO:0005975
Ssu3g1940 508 PRINTS Glycosyl hydrolase family 1 signature 425 436 IPR001360 GO:0004553|GO:0005975
Ssu3g1940 508 PRINTS Glycosyl hydrolase family 1 signature 471 483 IPR001360 GO:0004553|GO:0005975
Ssu3g1940 508 PANTHER GLYCOSYL HYDROLASE 15 499 IPR001360 GO:0004553|GO:0005975
Ssu3g1940 508 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 33 47 IPR033132 -
Ssu3g1940 508 Gene3D Glycosidases 15 500 - -
Ssu3g1940 508 PANTHER BETA-GLUCOSIDASE 41-RELATED 15 499 - -
Ssu3g1940 508 Pfam Glycosyl hydrolase family 1 27 500 IPR001360 GO:0004553|GO:0005975
Ssu3g1940 508 SUPERFAMILY (Trans)glycosidases 23 498 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1940 Ssu-Chr3 61802107 61806731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1940 21 444 Glycoside Hydrolase AT5G54570 72.471 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1940 K01188 - gmx:100783543 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1940 3 61802107 61806731 Ssu3g1940 3 61802107 61806731 ECH