Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1919 ATGTATGGTCATGTGGAAAAACTAGCAAGGGAAATATTGCTCGGGGTTAATTCTGTAGAGGGTGTTGAGGGCAAACTGTGGCAGCAGGTACCTGAGACACTGCCACCTGAGGAGCTCGATAGGCTGAGAGCACCACCCAAGAGTGATGAACCAATTATTAACGCATTTAAACTGCCTGAAGCAGATggttttgtctttggcttcccAACAAGGTTTGGAATGATGGCTGCTCAGTTTAAGGCTTTCCTAGATACAACTCAATATCTATGGAAAGCACAAATGCTTGCATCCAAGCCTGCTGGAATCTTCTACAGCACCAGTTCCCAAGGTGGTGGACAAGAGACTGCACCGTTTACTGCTATCACTCAGTTGGTTCATCACGGAATGATATTTGTTCCAATAGGATACACATTCGGTCCTGGCATGTTTGAGATGAAGGAGCTGAAAGGTGGAAGTCCTTATGGAGCAGGAACTTATACTGGTGATGATGGCTCTAGACAGCCGACTAAACTCGAATTGGAGCAAGCATTCCACCAAGGGAATTATATCGCCACCATCGCAAAGAAGCTCAAGGAAGATGTTCACCCAATTTTTACTCTACATAAAAGAGGATATTAA 618 0.432 MYGHVEKLAREILLGVNSVEGVEGKLWQQVPETLPPEELDRLRAPPKSDEPIINAFKLPEADGFVFGFPTRFGMMAAQFKAFLDTTQYLWKAQMLASKPAGIFYSTSSQGGGQETAPFTAITQLVHHGMIFVPIGYTFGPGMFEMKELKGGSPYGAGTYTGDDGSRQPTKLELEQAFHQGNYIATIAKKLKEDVHPIFTLHKRGY 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1919 205 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 1 190 IPR010089 GO:0003955|GO:0010181
Ssu3g1919 205 Pfam NADPH-dependent FMN reductase 58 134 IPR005025 GO:0016491
Ssu3g1919 205 Gene3D - 1 193 IPR029039 -
Ssu3g1919 205 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 1 191 - -
Ssu3g1919 205 SUPERFAMILY Flavoproteins 1 191 IPR029039 -
Ssu3g1919 205 ProSiteProfiles Flavodoxin-like domain profile. 1 183 IPR008254 GO:0010181
Ssu3g1919 205 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1919 Ssu-Chr3 60328832 60330545 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1919 K03809 - gmx:100796760 365.155