Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1896 ATGGTTGATAACATgatagtgttattttttttgctcCTTTTGCTCTCCTACACGAGAACCTGCACTTCACTAGACAGTTTAGCTGTGAATGAATCTATCCAAGATGGTGAAAGATTAGTTTCAGCAGATGGAACATTTGAAGTGGGTTTCTTCAGTCCTGGAAATGGAAATTCAACAAGTCGTTATTTGGGTGTGTGGTACCGGAATTTATCTCCTTTAACCGTGGTGTGGGTGGCCAACCGTGGAACACCTCTGCAGAGTAATTCAGGAGTCTTCAAACTCACTGAAGAAGGGGTTCTGGTGATTCTCAGTGGAACAAACAGGACTATCTGGTCGTCCAATATATCGAATAAAACAGTGAATAACTCAATTGTGAAGCTCTTGGACTCAGGCAACCTTGTGTTAAAGAATGGACATGATGATGACAAGGAGGATAAATTTCTGTGGCAGAGTTTTGATTATCCGTGTGATACGTTGTTGCCAGGAATGAAGCTTGGATGGAACTTACTAACTGGTATGGACAGGGTTGTGACATCTTGGAAAAGTGCAGTTAATCCAGCGAAGGGAGAGTATTCAGCAAAGATCGACACTAGAGGATGTCCACAATTACTTTTTATGAAGGGATctgttataaaatttagaatggGAGCATGGAATGGCCTTGGTTACACTGGATATCCAACTCAACAATTGAAGCAAAAACAAAGATATAAATTTGTCTTCAATGCAGAAAAAGTGTATTACCAGTATGAAATCATTGACAGATCAATTGTCTCCATATATGTATTGAGCCCTTCAGGCAGTTTGCAGGGTTTAGCTTGGACAAGTCAAAGAAGTGGTCAGAAGGTTATTGCTCTAGGCGGGGTAGACTCCTGCGATAATTATGCCTTTTGTGGTGTAAATTCTGTATGCAATATGGATGGTAATGCTCCGAAATGTGAATGCTTGAAAGGGTATGTTCCTAAATTCCCTGAACAATGGAATATTTCGTATTGGTCTAGCGGCTGTGTTACAAGGAATAAATCTATATGCAAAAACAATAGCACAGATAGCTTCTGGAGGTACACAAACATGAAATTGCCAGACTCATCTtcatcatggtataataaaacCATGAACCTTGAGGAATGTCAGAAGTCATGTCTGAAAAACTGTTCGTGTACGGCTTATACAAATTTGGATATCCGTGGTGGAGGAAGTGGCTGTTTGCTTTGGTTTGATGATCTGGTTGATATGAGGAAATTCTCTTGGTGGGGACAAGACCTTTACATCAGAGTCCCAACTTCTGAACTTGTTAATGGCCACAGAAAGAAGCAGAATCTGATAGGAATCACAATTGGCATGATTATTTTCGGATTCATTACATGTGTCtccataataatatttagaaagcAAGATTGCCTTGAAGTTGTCCATATCCTTAATGAATGGAACGAGGATGCTGTTGGAATGCATGTTCATGCGGATCTTCTTAGGCAGGTCTACGCCTATTGTCAACATGATTGGGAGCTTTCATTTACTCATGTCTCTCGTGCTAGAAATAGTGTTGCAGATGCTTTGGCTCACTTGGGTACTAGTATGCAGATAGACTCAATTTGGCCTCTTCCACCTCATACTGTCTTGCAGGCTTTTCTACAAGACAATCTCCTTTAG 1653 0.3902 MVDNMIVLFFLLLLLSYTRTCTSLDSLAVNESIQDGERLVSADGTFEVGFFSPGNGNSTSRYLGVWYRNLSPLTVVWVANRGTPLQSNSGVFKLTEEGVLVILSGTNRTIWSSNISNKTVNNSIVKLLDSGNLVLKNGHDDDKEDKFLWQSFDYPCDTLLPGMKLGWNLLTGMDRVVTSWKSAVNPAKGEYSAKIDTRGCPQLLFMKGSVIKFRMGAWNGLGYTGYPTQQLKQKQRYKFVFNAEKVYYQYEIIDRSIVSIYVLSPSGSLQGLAWTSQRSGQKVIALGGVDSCDNYAFCGVNSVCNMDGNAPKCECLKGYVPKFPEQWNISYWSSGCVTRNKSICKNNSTDSFWRYTNMKLPDSSSSWYNKTMNLEECQKSCLKNCSCTAYTNLDIRGGGSGCLLWFDDLVDMRKFSWWGQDLYIRVPTSELVNGHRKKQNLIGITIGMIIFGFITCVSIIIFRKQDCLEVVHILNEWNEDAVGMHVHADLLRQVYAYCQHDWELSFTHVSRARNSVADALAHLGTSMQIDSIWPLPPHTVLQAFLQDNLL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1896 550 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Ssu3g1896 550 CDD B_lectin 30 155 IPR001480 -
Ssu3g1896 550 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 473 - -
Ssu3g1896 550 Pfam PAN-like domain 344 412 IPR003609 -
Ssu3g1896 550 Pfam Reverse transcriptase-like 464 522 IPR002156 GO:0003676|GO:0004523
Ssu3g1896 550 Gene3D - 19 152 IPR036426 -
Ssu3g1896 550 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 473 - -
Ssu3g1896 550 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Ssu3g1896 550 CDD PAN_AP_plant 345 427 - -
Ssu3g1896 550 ProSiteProfiles EGF-like domain profile. 288 325 IPR000742 -
Ssu3g1896 550 SMART blect_4 30 155 IPR001480 -
Ssu3g1896 550 SMART ntp_6 347 426 IPR003609 -
Ssu3g1896 550 SUPERFAMILY Hairpin loop containing domain-like 346 408 - -
Ssu3g1896 550 Pfam D-mannose binding lectin 74 181 IPR001480 -
Ssu3g1896 550 Gene3D Hepatocyte Growth Factor 343 420 - -
Ssu3g1896 550 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 185 IPR036426 -
Ssu3g1896 550 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1896 Ssu-Chr3 59100035 59107595 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1896 - - aprc:113865090 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1896 3 59100035 59107595 Ssu3g1896 3 59100035 59107595 ECH