Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1894 atggtGGACAACTTCAGAATGTTACTCATTTGGTTCTTATTATTCTTCCGCTTGAGAAACTCCAATTCAATGGACAGTTTAGCTCCGAGTCAATCTATCCGAGATAATGAGACATTAGTTTCAGAAGAGGGAACATTTGAAGCGGGTTTCTTTAGCCCTGGAACTTCAATAGGACGATACTTGGGTATATGGTACAGGAATGTGTCTCCTTTAACAGTGGTCTGGGTGGCTAACCGAGAAAAACCACTTCAAAATAAGTCAGGAGTTTTAAAACTTGACGAAAGAGGGGTTCTTGTGATTCTCAATGGTGCGAACAGCACAATTTGGTGGTCCAACAACATATCAAGCAAAGTAGTAAAGAATCCAATTGCACGGCTCTTGGACTCCGGAAATCTTGTGGTGAAAAACGAACAGGATATAAATGAGGACAACTTTTTGTGGCAGAGTTTTGATTATCTATGTGATACATTTTTGCCAGGAATGAAGCTTGGACGGAACTTAGTAACTGGTCTAGACTGGTTTTTGTCATCTTGGAAAAATGAAGATGATCCTGCTGTGGGAGAACATTCTTTGAAAGTTGATCTTAGAGGGTatccacaattttttaaatacaaggGGGGTGTAATAATATCTAGAGGAGGCTCATGGAATGGACTGGCTTTGGTAGGTTATCCAACTCATCAACTCCCACAACAATATGTACctgaatttgagtttaatgaaaaGGAAGTGTATTATGAGTACAAGGTCCTTGATAGATCGATTTTCTTCAGATTAACATTGACCCATTCAGGGTCTGCGCAAAGTTTCCTTTGGACAAATCAAACAAGGAGCAAAAAAGTTCTCTCATTGGGTGGTGCAGATCCGTGTGAAAATTATGCTATCTGCGGTGCAAATTCTATATGCAATATGGATGGTAATGCTCAGACATGTGATTGCATCAAAGGGTATGTTCCAAAGTACCCTGAAGAATGGAATATATCATATTGGTATTATGGTTGTGTTCCAAGGAATAAATCTGATTGTACAACCAGCAACACAGATGGTTTCTTGAGGTACACAGATATGAAATTACCAGACACATCTTCATCATGGTTCAGTAAgaccatgaatcttgagaaatGTCAGAAGTCTTGTCACAAAAACTGTTCTTGTAAAGCATATGCAAATTTAGATATTCGTATTGGAGGAAGTGGCTGTTTACTTTGGTTTGATGATCTGATTGATATGAGACAATTCTCTAAAGGGGGACAAGACCTTTATTTCAGAGTCCCTGCTTCAGAGCTAGGTACTAAATTTTTTCGTTTGCTTCACTTCCCTTTCCTTTATGTTATCTGGTTGATTATATATTGCATTTTTCTAAGGGAAGTGGAAGGAGTGGAGTGA 1386 0.3723 MVDNFRMLLIWFLLFFRLRNSNSMDSLAPSQSIRDNETLVSEEGTFEAGFFSPGTSIGRYLGIWYRNVSPLTVVWVANREKPLQNKSGVLKLDERGVLVILNGANSTIWWSNNISSKVVKNPIARLLDSGNLVVKNEQDINEDNFLWQSFDYLCDTFLPGMKLGRNLVTGLDWFLSSWKNEDDPAVGEHSLKVDLRGYPQFFKYKGGVIISRGGSWNGLALVGYPTHQLPQQYVPEFEFNEKEVYYEYKVLDRSIFFRLTLTHSGSAQSFLWTNQTRSKKVLSLGGADPCENYAICGANSICNMDGNAQTCDCIKGYVPKYPEEWNISYWYYGCVPRNKSDCTTSNTDGFLRYTDMKLPDTSSSWFSKTMNLEKCQKSCHKNCSCKAYANLDIRIGGSGCLLWFDDLIDMRQFSKGGQDLYFRVPASELGTKFFRLLHFPFLYVIWLIIYCIFLREVEGVE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1894 461 PANTHER - 11 434 - -
Ssu3g1894 461 Pfam PAN-like domain 342 410 IPR003609 -
Ssu3g1894 461 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Ssu3g1894 461 PIRSF SLG 5 438 IPR035446 -
Ssu3g1894 461 CDD PAN_AP_plant 339 425 - -
Ssu3g1894 461 Gene3D Hepatocyte Growth Factor 341 423 - -
Ssu3g1894 461 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Ssu3g1894 461 Gene3D - 20 150 IPR036426 -
Ssu3g1894 461 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Ssu3g1894 461 CDD B_lectin 30 152 IPR001480 -
Ssu3g1894 461 Pfam D-mannose binding lectin 72 179 IPR001480 -
Ssu3g1894 461 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Ssu3g1894 461 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 11 434 - -
Ssu3g1894 461 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 184 IPR036426 -
Ssu3g1894 461 SMART ntp_6 345 424 IPR003609 -
Ssu3g1894 461 SMART blect_4 30 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1894 Ssu-Chr3 58998954 59000339 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1894 - - gsj:114416252 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1894 3 58998954 59000339 Ssu3g1894 3 58998954 59000339 ECH