Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1872 ATGGTGGCGAGATATGGCAAGGGTTCGGTTTTTCGTTTCCTCAttaggagTTGGGAAATAGCAATGGGTGATGGTAATTATGATAGAGCGTTGAGGGAGTTCTGTATTCCGGATTACATATTAGTGCCGGAATCTGAGGTAAGGAGTGTTTCACATGTACCTGCGTGTCCTGTGATTGTTTTCATAAACACCAAAAGTGGTGGCCAGCTTGGAGGGGAGCTTCTTCTTTCCTATAGTACACTTCTTAACAAAAACCAGGTTTTTGATTTGGGAAAAAGTGCTCCGGATAAGGTGCTGCAGAGGCTTTATGCTACTTTGGAAAAACTCAAGCGCAATGGAGATAATTTTGCCGCTGAAATTCAGAATAGGTTGAGGATAATTgttGCTGGTGGAGATGGTACTGCTAGCTGGCTTCTTGGAGTTGTATCTGACCTTAAATTACCTCAGCCGCCGCCAATTGCAACGGTGCCACTGGGGACGGGAAATAATCTCCCCTTTGCATTTGGATGGGGAAAGAAAAATCCAACCACGGATCTCCAATCAGTGACGTCCTTCCTAAATCATGTAAAAGCGgcaaaggaaatgaaaatagacaGttggcATATTATAATGAGAATGAAGGCTCCAAAAGAAGGTTCATGTGACCCTATTGCACCCCTTGAGCTGCCTCATGCTATGCATGCATTTCATCGTGTCTCTTCAACAGATAAACTAAACTTGGAAGGTTACCACACTTACCGTGGGGGATTTTGGAACTACTTTAGCATGGGAATGGATGCACAAGTATCTTATGCATTTCATTCTGAGAGGAAGTTACATccagaaaagtttaaaaatcaGTTATATAATCAGAGTGCCTATCTGAAGCTTGGATATAGACAAGGATGGTTCTTTTCTTCTCTGTTTCAATCTTCTTCACGGAATATTGCTCAGCTGGCAAAGGTCAAGATAATGAAACAAGGTCATTGGGAAGATCTCCACATACCTCGCAGCATACGGTCCATAGTTTGCCTCAACTTGCCCAGCTTTTCTGGTGGACTCAATCCTTGGGGAAAACCAAATAGGAAGAAATCAATTTACAGGGACCTGACTCTTCCCTATGTGGATGATGGCCTATTTGAGGTAGTTGGTTTCAGAGATGCTTGGCATGGCCTTGTTTTGCTTGCACCAAATGGACACGGGACTCGTTTGGCACAGGCCAGCAGAATCCGTTTTGAGTTTCACAAGGGTGCAGCTGACTGCACATTCATGAGAATTGATGGAGAGCCATGGAAACAGCCCCTTCCAAAAGATGATGACACAGTTGTTGTTGAGATATCACACCATGGTCAAGTTAGCATGCTTGCCACCCCATTGTGCCGTTCTAGAAGTATGCATGATCCCTCCTCACCTCCTGTTGACCGGGAAGAAGATGATAGTAGTGATGAAGAACCACCAGAAGATTGGGAAGAACGGCGCAAGTTTGGTGCAGCTGACACATTCAAATATCCTGATGGAATTGATATTGATATAGCTCATATAAGTTAG 1527 0.4257 MVARYGKGSVFRFLIRSWEIAMGDGNYDRALREFCIPDYILVPESEVRSVSHVPACPVIVFINTKSGGQLGGELLLSYSTLLNKNQVFDLGKSAPDKVLQRLYATLEKLKRNGDNFAAEIQNRLRIIVAGGDGTASWLLGVVSDLKLPQPPPIATVPLGTGNNLPFAFGWGKKNPTTDLQSVTSFLNHVKAAKEMKIDSWHIIMRMKAPKEGSCDPIAPLELPHAMHAFHRVSSTDKLNLEGYHTYRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLYNQSAYLKLGYRQGWFFSSLFQSSSRNIAQLAKVKIMKQGHWEDLHIPRSIRSIVCLNLPSFSGGLNPWGKPNRKKSIYRDLTLPYVDDGLFEVVGFRDAWHGLVLLAPNGHGTRLAQASRIRFEFHKGAADCTFMRIDGEPWKQPLPKDDDTVVVEISHHGQVSMLATPLCRSRSMHDPSSPPVDREEDDSSDEEPPEDWEERRKFGAADTFKYPDGIDIDIAHIS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1872 508 ProSiteProfiles DAG-kinase catalytic (DAGKc) domain profile. 53 206 IPR001206 GO:0016301
Ssu3g1872 508 PANTHER DIACYLGLYCEROL KINASE 28 502 IPR037607 GO:0004143|GO:0007165
Ssu3g1872 508 PANTHER DIACYLGLYCEROL KINASE 28 502 - -
Ssu3g1872 508 MobiDBLite consensus disorder prediction 452 490 - -
Ssu3g1872 508 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 56 442 IPR016064 -
Ssu3g1872 508 SMART dagk_c4a_7 57 200 IPR001206 GO:0016301
Ssu3g1872 508 Pfam Diacylglycerol kinase catalytic domain 57 192 IPR001206 GO:0016301
Ssu3g1872 508 Gene3D - 57 203 IPR017438 -
Ssu3g1872 508 SMART dagk_c4b_2 252 423 IPR000756 GO:0004143|GO:0007205
Ssu3g1872 508 Pfam Diacylglycerol kinase accessory domain 250 423 IPR000756 GO:0004143|GO:0007205
Ssu3g1872 508 Coils Coil 99 119 - -
Ssu3g1872 508 Gene3D - 249 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1872 Ssu-Chr3 58385183 58394734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1872 31 498 Acyl Lipid Metabolism Gene Families AT2G20900 71.967 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1872 K00901 - gmx:100801004 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1872 3 58385183 58394734 Ssu3g1872 3 58385183 58394734 ECH