Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1866 ATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATCACTATTTTCTCCCCCGAGGGGCGTCTCTTTCAAGTTGAGTATGCTTTCAAGGCTGTTAAGGCTGCTGGAATCACCTCAATTGGTGTCCGAGGAAAAGATTCGATTTGTGTCGTTACTCAGAAGAAGGTTCCGGATAAGCTTTTAGATCAGACAAGTGTTACGCATCTCTTTCCCATCACAAAGTACCTTGGTTTATTGGCAACTGGCATGACAGCTGATGCTAGGACACTGGTTCAACAAGCAAGAAATGAAGCAGCTGAGTTTCGCTTTACATATGGATATGAAATGCCAGTCGATGTATTGGCTAAATGGATTGCAGACAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTTGGAGTAGTTGCTATGGTTTTGGGTATTGATGACGAATATGGACCTCAGCTTTACAAATGTGATCCAGCTGGTCATTACTTTGGTCACAAGGCCACAAGTGCTGGATTGAAGGACCAAGAAGCAATTAATTTCTTggaaaagaagatgaagaatgaCCCTTCATTTACTTATGAGGAGACAGTTCAGACTGCCATTTCTGCCCTGCAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGATTGAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTTTATCCACCGAGGAAATTGATGAGCACTTGACTGCAATAAGTGAGCGTGACTGA 741 0.4251 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLSTEEIDEHLTAISERD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1866 246 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-6 1 243 - -
Ssu3g1866 246 Pfam Proteasome subunit A N-terminal signature 9 31 IPR000426 GO:0006511|GO:0019773
Ssu3g1866 246 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 8 245 IPR029055 -
Ssu3g1866 246 SMART Proteasome_A_N_2 9 31 IPR000426 GO:0006511|GO:0019773
Ssu3g1866 246 Pfam Proteasome subunit 36 220 IPR001353 GO:0005839|GO:0051603
Ssu3g1866 246 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 243 - -
Ssu3g1866 246 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 246 IPR029055 -
Ssu3g1866 246 CDD proteasome_alpha_type_6 8 220 IPR034642 GO:0019773
Ssu3g1866 246 ProSitePatterns Proteasome alpha-type subunits signature. 9 31 IPR000426 GO:0006511|GO:0019773
Ssu3g1866 246 ProSiteProfiles Proteasome alpha-type subunit profile. 24 239 IPR023332 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1866 Ssu-Chr3 58191013 58197416 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1866 K02730 - gmx:732640 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1866 3 58191013 58197416 Ssu3g1866 3 58191013 58197416 ECH