Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1855 ATGACAAGGGAATTCCACAACAAAACAGAGGTAAGTGTGGGGTTGAAAACCCTGTGGCAAGCTCTGTCCAAGGATTTGGCAATTATAATTGCGAAGATTATACCAAATATTGTGAAAGATGTGAAAGTGATAGAAGGGGATGGAGGGGTTGGCACAATCTTCcttttcactttcttctctGCTGTATCCCCAGTAAGTTACCAGAAGGAGAAGATCACAGAGCTTGATGAGATTTCCCATGAAATTGGATTGCAAGTGGTTGAAGGAGGCTATCTGAATCAAGGTTTCTCATACTACAAGACAACTTTTCAACTCTCCGCAATAGATGAGCATAAGACTTTGGTCAACGTGAAAATCTCTTTTGACCATGAGTGGGACACAGAAGAAAGCACCCAGCCAATGAAGACATCAGAGTCAGCTTTATTCTTTGTTAGATCTCTAGAAACATATCTGTTGAATGATGCTTga 468 0.3932 MTREFHNKTEVSVGLKTLWQALSKDLAIIIAKIIPNIVKDVKVIEGDGGVGTIFLFTFFSAVSPVSYQKEKITELDEISHEIGLQVVEGGYLNQGFSYYKTTFQLSAIDEHKTLVNVKISFDHEWDTEESTQPMKTSESALFFVRSLETYLLNDA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1855 155 Coils Coil 152 155 - -
Ssu3g1855 155 PANTHER - 3 154 - -
Ssu3g1855 155 SUPERFAMILY Bet v1-like 4 153 - -
Ssu3g1855 155 Gene3D - 1 155 IPR023393 -
Ssu3g1855 155 Pfam Pathogenesis-related protein Bet v 1 family 4 153 IPR000916 GO:0006952
Ssu3g1855 155 CDD Bet_v1-like 4 151 - -
Ssu3g1855 155 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu3g1855 155 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu3g1855 155 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu3g1855 155 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu3g1855 155 PRINTS Major pollen allergen Bet V1 signature 25 35 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu3g1855 155 PANTHER PHYTOHORMONE-BINDING PROTEIN 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1855 Ssu-Chr3 58066816 58067411 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1855 - - gmx:100808820 213.772