Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1847 AtggagaaggaggaggaggacaAGTACGCGAAGGAATTGGAGGTGGCAGTGAGGGTGGTCCACGTAGCGTGTGCTCTGTGCGGGAGGGTGCAGGAGAGGCTCCTCGTCACCGGCAACGATCACGTTGTGTCCAAGGACGATGATTCTCCCGTTACTGTCGCAgACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATTGTTGCTGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAGGCTTACTGGCAGATGTTGTGAATACTGTGAATGAGTCTTTAGCTTTCGCATCCAAGTACGGTCTTCAAAGTCCGGAGACAACTCTAGGGACGTCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCCCCAGGGGGAGACATTGGGTACTTGACCCTGTTGATGGCACATTAGGATTTGTACGCAGGGACCAGTATGCTGTTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTTGGGTGTCCTAATTACCCACTAAAGACTGAATGGCTTAATTATCATTACCAGTATCATCAAACAATGCCACATTCAGATCTAATAACTCTGGATACCGGGGGAAAAGGATGTGTATTGTATGCAAGAAGAGGCAGTGGTGAGGCATGGTTGCAGTCATTAGTTGATGACGATAAAATGCTAGAATGGCCAAATTGTGCTACACTTATTCGTGTTTCTTCCACTGATGATCCAGCGTTGGCAACTCTCTGCGAACCGGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTTGGACTTAGAAAACAGCCCTTGCGCGTGCACAGCATGGTAAAATACGCAGCAATAGCTCGGGGAGACGCAGAGATATTCATGAAATTTGCCAAGTGTGGGTACAAGGAGAAGATATGGGACCATGCTGCTggtgttgttattgttgaagaGGCTGGTGGTGTGGTCACTGATGCTGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACACtgcatgaaaaattaattgatgctGTTTATGCTAGCTGGGACTCCTCAAATTTATGA 1155 0.4485 MEKEEEDKYAKELEVAVRVVHVACALCGRVQERLLVTGNDHVVSKDDDSPVTVADFSVQATISWLLSEIFGVQNVSIVAEEDIQTISKDESAGLLADVVNTVNESLAFASKYGLQSPETTLGTSEVLEAIARCNSTGGPRGRHWVLDPVDGTLGFVRRDQYAVALALIEDGKVVLGVLGCPNYPLKTEWLNYHYQYHQTMPHSDLITLDTGGKGCVLYARRGSGEAWLQSLVDDDKMLEWPNCATLIRVSSTDDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1847 384 SUPERFAMILY Carbohydrate phosphatase 9 377 - -
Ssu3g1847 384 PANTHER PAP-SPECIFIC PHOSPHATASE HAL2-LIKE 6 384 - -
Ssu3g1847 384 Gene3D - 8 239 - -
Ssu3g1847 384 PANTHER PHOSPHATASE 6 384 - -
Ssu3g1847 384 CDD PAP_phosphatase 12 377 - -
Ssu3g1847 384 Pfam Inositol monophosphatase family 47 379 IPR000760 GO:0046855
Ssu3g1847 384 ProSitePatterns Inositol monophosphatase family signature 1. 144 157 IPR020583 -
Ssu3g1847 384 Gene3D - 248 378 - -
Ssu3g1847 384 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 9 383 IPR006239 GO:0006790|GO:0008441
Ssu3g1847 384 ProSitePatterns Inositol monophosphatase family signature 2. 320 334 IPR020550 GO:0046854
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1847 Ssu-Chr3 57933245 57937852 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1847 K01082 - gmx:100806320 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1847 3 57933245 57937852 Ssu3g1847 3 57933245 57937852 ECH