Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1833 ATGAAGCCAGGTGACAAACTGTTTGATAAAATCAACAGTGCAATCGTGGAGTGCAAGATTGGGTTGGCTGTGATATCACCACGCTACTGTGAGTCCTACTTTTGCCTTCATGAGCTGGCCCTTCTCATGGAGTGCAAGAAGAAGGTGATACCCATCTTCTGTGACGTTAAGCCATCTCAATTACGCGTCATCAACAACAGAAAATGGACCCTCGAGGACCACCGGCGATTCAAATTGGCTATTGAGGAAGCAAAGTACACTGTGGGACTCACCTTCAACTCTTCAGAAggGAACTTCTCCGGTATTGTGACTAGTGCTTCTGATATCATCATCGAGAGCTTGATAGAGCTTGAGGATGAAGAGAAGACTACGCAGCATCAATACTTGCCAATTAGCTAA 399 0.4511 MKPGDKLFDKINSAIVECKIGLAVISPRYCESYFCLHELALLMECKKKVIPIFCDVKPSQLRVINNRKWTLEDHRRFKLAIEEAKYTVGLTFNSSEGNFSGIVTSASDIIIESLIELEDEEKTTQHQYLPIS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1833 132 Pfam TIR domain 2 62 IPR000157 GO:0007165
Ssu3g1833 132 Gene3D - 1 88 IPR035897 -
Ssu3g1833 132 PANTHER COP-1 INTERACTING PROTEIN 1 132 - -
Ssu3g1833 132 ProSiteProfiles TIR domain profile. 1 85 IPR000157 GO:0007165
Ssu3g1833 132 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 63 IPR035897 -
Ssu3g1833 132 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1833 Ssu-Chr3 57519520 57520620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1833 5 121 Miscellaneous Gene Families AT1G57670 29.323 2.59e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1833 - - gmx:100526930 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1833 3 57519520 57520620 Ssu3g1833 3 57519520 57520620 ECH