Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1830 ATGACCCGCGGCGTGGAGGAGGACCACGACGACATCGACCCCTCCCTTTTCCACGACTCCAACGACCGCTTGCTCTCCTCCTGCTCCtgctccacctccacctccgaCGACGACACCCCCACTCCCCGAAacgacaccaccaccaccaacggCAGAAACGACACCTCCAATCCCCAAAACGACGCCACCCATGCCCTCCCCCAATTCCCTTTCCCCACCATGTGCAAGTACGACGCCTGGATCTCCGAACCCTCCTCCCTCTCCGAACGCCGCTCCCGCCTCCTCCGCCAGTTTGGTCTCCCCACTCCACCGCCCTCCGCCGGCGCCGCCATCCCCCGATCGGCCTCCTCCAACCAATGCACCGACACATCCGCCGCCGACGGCGGTGGCGGAATTTCCCGATCGAAATCCGACAACACCGCGGATCGCGGCAACAGGCATTGCAAGTCCTCGGCTGTTCCCATCCGCGACAATGTCAACGGTTTTCTcgtaaataacaacaacaacaacaataataataataataataataataataatcatagtCATTGTGTTaatggtggtggttgtgtttcCGTGAATAATAGGATTTGTGTGAGTGTGTATGAAGATGGTGGAATTGGGGaggataatgataatgatgaacAAGCGTGTACGATTAGGGATTTGGATAATGGGAAGGAGTTTGTGGTTAAGGAGGATGGGGTGTGGAATGAGGTGAAGGAGGTGGGGACTGGGAGGCATTTGACTATGGAGGAATTCGAGACGACGGTGGGGCATTCGCCGATTGTTCAGGAACTAATGAGGAGGCAGAGTGTGGAGGAAGAAGGTGATGGGGagggtgatgatggtggtggtggtggtgatgatgaagGGGATGGTGGCAAGGTGAGGAAGAGAGGAGGGGGGTGGTTTAAGTTTATGGGGTTGAAGGGTGTTGTGGTGGGTCAGAGGGAGAGGCGGAGTGGTGATGAGAGGGATACATCGTCGTCGGAGAAAGGGGGTGGCCGGCGGTCTAGTTCGGCCACAGATGATAGCCAGGATGGTGGTGGTTTGGTTCATGGGGGTGAGAGGGTGAGGGTTAGGCAGTATGGGAAGTCATGTAAGGAGTTTACTGGGGTTTTCAAGAGCCAGGAGATTCAGGCTCATGATGGACCCATTTGGAGCATTAAGTTTAGTTTGGATGGGAGATATCTAGCTAGTGCGGGTGAGGATTGTGTGATCCATGTTTGGCAGGTTGTGGAGGCCGAGAGGAAGGGTGAGCTACTGGTGGAGAAATCGGAAGAGGGGAATTTGAACATGGTGTTTGTTGTGAATGGGTCGCCGGAGCCTTCGTCTCCTGGCGTGGACAATAATTCGGTGAAGAAGAGGAGGGGGAGGTTGTCTGTTAGCAGAAAGCCGGAAACTGTGTTTGCACTCGCTGAAAAACCGGTTTGCTCCTTCAAGGGCCATCTCCATGTTGTGCTTGACCTTTCTTGGTCGAAGTCTCAGTACTTGCTCTCATCTTCGATGGACAAAACAGTGCGACTATGGCATTTGTCTAGCAAGtcttgtttgaaaattttttcacaCAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTACATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGACAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGCCACTTATATGATACATCTGAAAATAAGTTGCAACATAAAAGTCAGATAAATTTGCAAAACAGGAAAAAGAGATCGAACCACAAGAAAATTACTGGCTTCCAGTTTGTGCCAGAAAGTTCATCAGAAGTACTCATCACTTCTTCTGATTCTCGGATTCGACTTGTTGATGGCATTGATCTGGTTCATAAATTCAAAGGGTTTCGGAATGCAAATAGCCAAATTTCTGCCTGCCTCACAGCAAATGGTAAATATGTTGTCTCAGCAAGTGAGGATTCTCATGTATACATTTGGAAAAATGAAGCTGATTGCAGACCTAGCAGGAGTAAAGGTGTCACTGTAACAAGCGCATATGAACATTTTCACTGTAAAGATGTGTTAGTGGCAATTCCTTGGCCTGGTATGGATGATGCATGGGAGATGCACGATACATATTTTGGAGAAGAACCAGAGCTTGATGATAATGGGGATGAGGTCTCGTCGACCAATCATCCTCCTACCCCCGTGGAGGAAAATTTTGGTTCAGAGGGTTCACAATTTGCTTCAGGTTGCTACAATAGTCCACTTCATGGAACCATTGCAAGTGCAACAGATAGTTATTTTCTTGATAGAATTTCTGCGACATGGCCTGAGGAAAAACTTCTAACTACAAGGGACCGAAGCCCTCGGGCAAGTGTGGATTTATCTAATGGGGTGAATCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTGAAggggaaattaaaattttccaaaattttggATTGCCACTTGGTATATAA 2565 0.453 MTRGVEEDHDDIDPSLFHDSNDRLLSSCSCSTSTSDDDTPTPRNDTTTTNGRNDTSNPQNDATHALPQFPFPTMCKYDAWISEPSSLSERRSRLLRQFGLPTPPPSAGAAIPRSASSNQCTDTSAADGGGGISRSKSDNTADRGNRHCKSSAVPIRDNVNGFLVNNNNNNNNNNNNNNNNHSHCVNGGGCVSVNNRICVSVYEDGGIGEDNDNDEQACTIRDLDNGKEFVVKEDGVWNEVKEVGTGRHLTMEEFETTVGHSPIVQELMRRQSVEEEGDGEGDDGGGGGDDEGDGGKVRKRGGGWFKFMGLKGVVVGQRERRSGDERDTSSSEKGGGRRSSSATDDSQDGGGLVHGGERVRVRQYGKSCKEFTGVFKSQEIQAHDGPIWSIKFSLDGRYLASAGEDCVIHVWQVVEAERKGELLVEKSEEGNLNMVFVVNGSPEPSSPGVDNNSVKKRRGRLSVSRKPETVFALAEKPVCSFKGHLHVVLDLSWSKSQYLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYDTSENKLQHKSQINLQNRKKRSNHKKITGFQFVPESSSEVLITSSDSRIRLVDGIDLVHKFKGFRNANSQISACLTANGKYVVSASEDSHVYIWKNEADCRPSRSKGVTVTSAYEHFHCKDVLVAIPWPGMDDAWEMHDTYFGEEPELDDNGDEVSSTNHPPTPVEENFGSEGSQFASGCYNSPLHGTIASATDSYFLDRISATWPEEKLLTTRDRSPRASVDLSNGVNQNMSAWGMVIVTAGLEGEIKIFQNFGLPLGI 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1830 854 MobiDBLite consensus disorder prediction 739 764 - -
Ssu3g1830 854 PRINTS G protein beta WD-40 repeat signature 399 413 IPR020472 -
Ssu3g1830 854 PRINTS G protein beta WD-40 repeat signature 541 555 IPR020472 -
Ssu3g1830 854 PRINTS G protein beta WD-40 repeat signature 499 513 IPR020472 -
Ssu3g1830 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 481 515 - -
Ssu3g1830 854 MobiDBLite consensus disorder prediction 271 300 - -
Ssu3g1830 854 MobiDBLite consensus disorder prediction 20 66 - -
Ssu3g1830 854 Gene3D - 338 445 IPR015943 GO:0005515
Ssu3g1830 854 MobiDBLite consensus disorder prediction 1 18 - -
Ssu3g1830 854 Pfam WD domain, G-beta repeat 379 411 IPR001680 GO:0005515
Ssu3g1830 854 Pfam WD domain, G-beta repeat 651 689 IPR001680 GO:0005515
Ssu3g1830 854 Pfam WD domain, G-beta repeat 517 554 IPR001680 GO:0005515
Ssu3g1830 854 Pfam WD domain, G-beta repeat 476 511 IPR001680 GO:0005515
Ssu3g1830 854 MobiDBLite consensus disorder prediction 316 357 - -
Ssu3g1830 854 SUPERFAMILY WD40 repeat-like 377 692 IPR036322 GO:0005515
Ssu3g1830 854 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 204 853 - -
Ssu3g1830 854 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 186 - -
Ssu3g1830 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 421 IPR001680 GO:0005515
Ssu3g1830 854 MobiDBLite consensus disorder prediction 317 333 - -
Ssu3g1830 854 MobiDBLite consensus disorder prediction 749 764 - -
Ssu3g1830 854 MobiDBLite consensus disorder prediction 97 151 - -
Ssu3g1830 854 Gene3D - 452 716 IPR015943 GO:0005515
Ssu3g1830 854 PANTHER WD REPEAT DOMAIN 44 204 853 IPR040324 -
Ssu3g1830 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 555 IPR001680 GO:0005515
Ssu3g1830 854 MobiDBLite consensus disorder prediction 1 68 - -
Ssu3g1830 854 SMART WD40_4 557 595 IPR001680 GO:0005515
Ssu3g1830 854 SMART WD40_4 474 512 IPR001680 GO:0005515
Ssu3g1830 854 SMART WD40_4 648 689 IPR001680 GO:0005515
Ssu3g1830 854 SMART WD40_4 608 647 IPR001680 GO:0005515
Ssu3g1830 854 SMART WD40_4 515 554 IPR001680 GO:0005515
Ssu3g1830 854 SMART WD40_4 373 412 IPR001680 GO:0005515
Ssu3g1830 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 413 - -
Ssu3g1830 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 555 - -
Ssu3g1830 854 MobiDBLite consensus disorder prediction 111 138 - -
Ssu3g1830 854 PANTHER WD REPEAT DOMAIN 44 1 186 IPR040324 -
Ssu3g1830 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 481 521 IPR001680 GO:0005515
Ssu3g1830 854 SUPERFAMILY NHL repeat 179 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1830 Ssu-Chr3 57237307 57244703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1830 478 689 Miscellaneous Gene Families AT5G08390 23.423 5.87e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1830 K20241 - gmx:100806518 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1830 3 57237307 57244703 Ssu3g1830 3 57237307 57244703 ECH