Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1825 ATGAGGGGTCCTTTGGGTGCAGTAATAGGGAGGTACCCATCAAGTGATGGTGTCACCCAAATGGGTGGAATCATAAGGCACAACAGGAAATGCAGGGACATCACTGTTCTTGTGATCTTCATAGCTTTTTGGATAGCAATGATTGTGAACTCCAGCTTTGGTTTCAACCAAGGGAACCCGCTAAGGCTCACTTATGGATTGGACTACAAGGGGAATGTGTGTGGGGACAAGCATGCACACCCTGGCCTTAGTGAATTGGAGCTTAGATATTGGCAAAATCCTAATCAGGTTTATCAGAGTGGATTGAAGGATAGCCAATTCAGACTGGCTGATGCCCGCAGTATATGCTTGTTGGACTGCCCTACACCTTCTGAAGATTCTCTTAATTGGGTGTGTGATTATCCTGAAGGAGATATTCGTCTTTCGATGAAAGATTGGGTTAATAGGAACTATGATTATTTTGAGTTCCTTACACCAGAAATGAGAAACTCCTCTCTTCAGCTTCAGGGTCCATGTTATCCTGTCATATTTCCCAGTGTAAATGtttacTGGAGTTGCCAATTCATTGCTCGAGCGTCAAATACATCTTTGAAGCATTGGCAGCAGATGGGTGGAGTTAACATCAACGAAGACATTGTTATTGATAAGTCTATTCACAAGTCTATTAATTCTCGGTCAGCTGTCTTAAagAGATACATGGCTGACATAGGAAAGGCATGGCCTGTGCTGATTGTTTGTGGAGGGATTTTGCCTTTTTTCTCTGGATGGATTGGAAATGACTCTATTTCTCCCATCATTGGTGAGCATGACCCTTACATTAGTGTATATGGGAGGGAGCTGACTCATATACGAGCTGTCACTATACTTATGACTTTTATCATGGTTGTCGCCATTCTTACATCAATCGCTATTGTTCGACGCATCCTTATGGCAACATCTGTTGCTGCAAAAGTGATAGGAGAAGTTCAAGCTGTTATTATTTTCCCACTCATTCCATATGGTATCCTTGCAGTGTTTTACATGTTCTGGATTTCTGCTGCTCTCCATTTGTTCAGCTCTGGCCAGGTTGTTCAGAATAACTGCAATGCTAACTGCTGCACATATGATCTTGTGGCAAAACGGGTAAACTGTGATCGTTGTTGTGGTTATAGTATCCATTATACACCACATATTGGAGTTGCCATCCTTTTCCACCTATTTGGGTGTTACTGGGCTACACAATTTTTCATAGCTTGCTCCTCAACAGTGATTGCTGGGTCTGTTGCCTCTTATTACTGGGCCGGTGGTGAAACATCTCCAGAAATTCCATTTCTTTCTGTCTTTTCCTCCATGAAGAGGCTTATGCGTTACAGTCTTGGGTCTGTGGCTCTTGGCTCTCTGATTGTATCATTTGTAGAATCAATTCGCTTTCTGCTTGAAGCTATTCGTCGGAAACTGAAAGTCTCAAGTCACGGGCATGACAGCTGCTTGGGCAAGGCTGCATACCAATCTTCTCAATGTTTTCTCAGGTGTATTGAATGGACCATCAAATCAGTAAACCGAAATGCTTACATCATGATTGCTATAACGGGCAAAAGTTTCTTTATCGCTTCTTCTATTGCGACAGAGTTGATCATGAATAACATTCTAAAGATTGGGCGTCTTAACGTGATCGGAGATGTCATTTTGTTCCTTGGAAAGCTGTGTGTCGGCCTCTCAAGTGCTTTGTTTGCCTTCCTCATGTTGGACACACACAAGTACAGATCTGCTCATAACAAGACCTCATCTCCACTCTTGCCTGTTGTGGTTTGCTGGGTTCTTGGATACATTGTTGCAACCCTTTTCTTTGCAGTTGTGGAGATGTCAATTGATACCATAGTTCTCTCATTCTGCCAGGATTCTGAAGAGCACCAAGGGACAGCCCAGTATGCTCCACCCCTTCTCATTGAGACCCTCAGTGACCAAAATGAGATGCAGAGACTCACGCAAGGACCCTAA 1977 0.4315 MRGPLGAVIGRYPSSDGVTQMGGIIRHNRKCRDITVLVIFIAFWIAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHAHPGLSELELRYWQNPNQVYQSGLKDSQFRLADARSICLLDCPTPSEDSLNWVCDYPEGDIRLSMKDWVNRNYDYFEFLTPEMRNSSLQLQGPCYPVIFPSVNVYWSCQFIARASNTSLKHWQQMGGVNINEDIVIDKSIHKSINSRSAVLKRYMADIGKAWPVLIVCGGILPFFSGWIGNDSISPIIGEHDPYISVYGRELTHIRAVTILMTFIMVVAILTSIAIVRRILMATSVAAKVIGEVQAVIIFPLIPYGILAVFYMFWISAALHLFSSGQVVQNNCNANCCTYDLVAKRVNCDRCCGYSIHYTPHIGVAILFHLFGCYWATQFFIACSSTVIAGSVASYYWAGGETSPEIPFLSVFSSMKRLMRYSLGSVALGSLIVSFVESIRFLLEAIRRKLKVSSHGHDSCLGKAAYQSSQCFLRCIEWTIKSVNRNAYIMIAITGKSFFIASSIATELIMNNILKIGRLNVIGDVILFLGKLCVGLSSALFAFLMLDTHKYRSAHNKTSSPLLPVVVCWVLGYIVATLFFAVVEMSIDTIVLSFCQDSEEHQGTAQYAPPLLIETLSDQNEMQRLTQGP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1825 658 Pfam Plasma-membrane choline transporter 288 628 IPR007603 GO:0022857|GO:0055085
Ssu3g1825 658 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 254 656 IPR007603 GO:0022857|GO:0055085
Ssu3g1825 658 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 3 254 IPR007603 GO:0022857|GO:0055085
Ssu3g1825 658 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 254 656 - -
Ssu3g1825 658 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 3 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1825 Ssu-Chr3 57167875 57174311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1825 K15377 - gmx:100803501 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1825 3 57167875 57174311 Ssu3g1825 3 57167875 57174311 ECH