Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1824 ATGCCGTTATTCTCCGCGTCTCGGAACCTCGCCGCAATTTTTCTGCGCCACTGCTCCACAGCCGCGACGAACCGAAGAAACCTCTATTCCCGAATCAGCCCCCTCGGAGACCCTTCCGTCAGCGTGGTCCCCGTTCTCGACAAGTGGATCCAAGAAGGTAACGCCGTTAACGGCCCTCAGCTCCAACGCATCATCAAGACCCTCCGTACCCGCAAGCGCCTCAACCAAGCACTTCAGGTTTCTGAGTGGATGAGTAGCAAAGGGCTATGCCCAATTTCACAGGGTGACCAAGCGGTGCAGTTAGACCTCATTGGTAGTGTTCGTGGAGTGGAGAGTGCGGAGAGGTATTTTCAGAGTTTGAGTGATGGAGACCAAACGTGGAAGGTTCACGGTGCTCTTCTGAATTGTTATGTGAGAGAGGGATTGGTTGATAAGTCACTCTCCCAGATGCAGAAGATGAAGGACATGGGTTTTGTTTCCTTTCTCAATTACAACAACATAATGTGCCTCTACACGCAGACCCAACAACTAGAGAAAGTCCCTGGTGTTTTGGCACAGATGAAGAAGGATGGTGTTCCTCCAAACATTTTCAGCTACAGGATTTGCATAAACTCTTACGGCACAAGAGGGGACCTCGCAAATGTGGAGAAACTGTTGGAGGAGATGGAGATGGAACCCCACATTGGCACAGATTGGATGACATATTCTATGGTGACCAAGTTCTACATAAAAGCAGGCCTGAAGGAGAAGGCTCTGGTGTGCCTGAAGAAGTGTGAGGAAAAGGCAGACAAGCACGACGCGCTTGCCTACAACCATCTGATTTCACACTATGCAGGTCTTGGGAGCAAGGGGGCCATGATGAGAGTTTGGAAGCTCCAGAAAGCCAACTGCAAGAAGCAGCTTAACAGGGAGTACATAACCATGTTGGGTTGTTTGGTGAAGCTGGGGGAGCTTGATCAAGCTGAAAAAGTACTTGGTGAATGGGAGGTATCTGGTAACACTTGTGATTTCAGAGTGCCTAACATCCTCCTGATTGGGTATTCCCAAAGGGGATTGATTGGGAAGGCAGAAGCACTGCTCCAAAGCATGGTCGCGAAAGGGAAGACGCCGACTCCTAACAGTTGGGGCATCATTGCATCTGGGTATGTGGCCAAGGAGAACATGGAGAAGGCATTTCAGTGCATGAAGGAAGCTGTGGCTGTGCAAGCCCAGAATAAACGTTGGAGACCAAAAGTTGATATCATTTCCAGCATATTGAGTTGGGTCACTAATAACAAAGATATAGGGGAAGTGGAAGATTTTGTCAATTCATTGAAGACTCTGAATTCAATGAACAGGGACATGTATCTGTCCTTGATCAGGATGTATGTTAGATGTGGGAAGGATGTAGATGGGATTTTAGAGAGTATGAAAGCTGATAATATAGAGCTGGATGAAGAGATAGAGGGAACTCTTAACTCAtaa 1464 0.4795 MPLFSASRNLAAIFLRHCSTAATNRRNLYSRISPLGDPSVSVVPVLDKWIQEGNAVNGPQLQRIIKTLRTRKRLNQALQVSEWMSSKGLCPISQGDQAVQLDLIGSVRGVESAERYFQSLSDGDQTWKVHGALLNCYVREGLVDKSLSQMQKMKDMGFVSFLNYNNIMCLYTQTQQLEKVPGVLAQMKKDGVPPNIFSYRICINSYGTRGDLANVEKLLEEMEMEPHIGTDWMTYSMVTKFYIKAGLKEKALVCLKKCEEKADKHDALAYNHLISHYAGLGSKGAMMRVWKLQKANCKKQLNREYITMLGCLVKLGELDQAEKVLGEWEVSGNTCDFRVPNILLIGYSQRGLIGKAEALLQSMVAKGKTPTPNSWGIIASGYVAKENMEKAFQCMKEAVAVQAQNKRWRPKVDIISSILSWVTNNKDIGEVEDFVNSLKTLNSMNRDMYLSLIRMYVRCGKDVDGILESMKADNIELDEEIEGTLNS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1824 487 Pfam PPR repeat 132 158 IPR002885 -
Ssu3g1824 487 Pfam PPR repeat 341 367 IPR002885 -
Ssu3g1824 487 Pfam PPR repeat 305 332 IPR002885 -
Ssu3g1824 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Ssu3g1824 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Ssu3g1824 487 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 18 485 - -
Ssu3g1824 487 TIGRFAM PPR: pentatricopeptide repeat domain 341 371 IPR002885 -
Ssu3g1824 487 TIGRFAM PPR: pentatricopeptide repeat domain 164 196 IPR002885 -
Ssu3g1824 487 Gene3D Tetratricopeptide repeat domain 58 230 IPR011990 GO:0005515
Ssu3g1824 487 Pfam PPR repeat family 164 206 IPR002885 -
Ssu3g1824 487 Gene3D Tetratricopeptide repeat domain 264 411 IPR011990 GO:0005515
Ssu3g1824 487 PANTHER OS12G0527900 PROTEIN 18 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1824 Ssu-Chr3 57152677 57155593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1824 28 478 EF-hand Containing Proteins AT1G02150 32.230 2.56e-80 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1824 - - gmx:100804385 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1824 3 57152677 57155593 Ssu3g1824 3 57152677 57155593 ECH