Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1810 ATGAGCAGATCCGTCGCGCCGCCGCCGCCGCGGCCGCAGCACTCGTTTCCGGGTCCCAAAGGGAGTGCGTGCTCCGGAAGCAGCTCGCGCAGCTTCATGGACCCCGGCGTGATCGAGATTCAGCCTCCGACCAATAACGCGCCCAATTCGACGAAGCAGAAAGAGGCTATTGTGCATGATGTGATTGACATCGACAGGGATGATGACTCTGCAGATTTAGTATTAACTGGTGAAAAAGTTGGAAAAGGTGACAAGGGGAAGGCAAAAGAATCCATTCATGATGGTTATGATGATCATCAAAATATGGAAGTGTTTTCTGTATCAGGTGATGAGCCTGGTTCTGACAGTTcatgtgatgatgatgatgatgactacTCTGATTTGTTTTCGGAAGATTACATGGACGTAGATCAGTATGCTTTAATACAGACACATTTTGATAATGTGGATATACCTCCTGGAATTGAGGCACCCATTCCTTGGTTGGCAGACTATGGTCTAGGTCCGAAGAAGACTAACAGTGATTTGTTGTCTCCTTGGTCTGATACTCAGTCTGATGCTAAAAATTCTCATGTGACTGACTCATCTCAGCCTTCATTGTCAATAGAGCCTACTAACCCTGACATCCAAGGACCTTCTGCAGGTAGTTCTAGTTTGCAAATCAAACTGGATGCTATTTTTAAGGACCCTTCTGCAATAGAGTTATCTTCTCCTCCGGTACTTTCTCAAACTGCCCTGAGTAAGAAGAAATCAAATGCCTCACAGTGCAAGAGGCGCAAGTTAAAGTTTGCATTCGGAATGGGGTCATCTAAATCTTCGGGACCTTCTGAGAGTAAAAAGAAGCCTAACATTTTTTCAGCTAACCATGGCTTTGTTCACAACTTGGAGCCCAAGAAACTGCCACATGTAGGCGGGCCACTACATTGGGgacattttgaaaattcaatgaAAGCAGCTGGAAGTAACAGTCCATATCATCATCCACATTTCGTTGGACCTTCATTTCATTTTCCAGGACCTCCATTTCATTTTCCAGGTCCTGAATTTGTTAATGATTTGTGGATGAAGAGTACTTATCATTTTCAGCCATTACCTAGTTTTCCAGCTAATTCGAGTGTACTTGATACCTTTATTCCTCTTCATGCCCATCCTCCTGAGCAATTGTTTGATAACTCTTGGGTTCATAATTCTGTGGGAGATGGAAATAATGGAACAACTGCCAATTGTACTGTTGCTACAATATCTGATGAAGCCAGAGATGAAATTCTgaggaaatttcaaaacttcaaacaatttgaCACCATTGAAGATGCTTCAGACCATTACTTTGTTCATGCTAACTCTTCCATGAAGCAGCATCCAAAGAATTGGGCTAAAAGAATCCAGGAAGAGTGGAAGTCATTGGAGAAGGATTTACCAGATACAATATTTGTTAGAGTTTATGAATCAAGAATAGATCTTTTGAGGGCTGTGATTATTGGAGCAGAGGGAACGCCTTATCATGAtggccttttcttttttgatgttTTCTTCCCGAGTGGCTATCCCAATGTACCCCCGCAAGTCCACTACCACTCTGGTGGGCTTCGGCTCAAtccaaatttatataattgcgGAAAAGTTTGCCTCAGTCTACTTAACACCTGGTCTGGCCATAAGAATGAGAAGTGGCTTCCAGgtgtttcaacaattttacagGTTCTGGTCTCTATACAGGGTCTAATCTTGAATGCAAAGCCTTATTTTAATGAGCCTGGATATGCACGTCTGAGTGGTTCAAAAGATGGTGAAATGCTATCCCTGCAGTACAATGAGGACACATTCATCCTATCATTGAAGACAATGGTGTATATCATAAGAAGGCCTCCAAAGAATTTTGAGGAGTTCGTTATTGGGCACTTCTGTAGCCGAGCTCTTGATATTCTGGTGGCATGTAAAGCATACATGGATGGTGCTCAAGTTGGCTGTTTGGTCAAAGGTGGGGTACAGGATGTTGATCAGGGTGACAAGAGCTGCTCAGACCAGTTTAAGACATCTTTAGCTCCATATGTGGATATGCTTGTTAGAGAGTTTACACAAATTGGAGCCAAGGACTGTGACAAAGTCTTTCCATCAACAGCAGCGAATAATCCGTTGGGTGAAATGCCTGTGGCTGCTACAATTTCTTGA 2169 0.4112 MSRSVAPPPPRPQHSFPGPKGSACSGSSSRSFMDPGVIEIQPPTNNAPNSTKQKEAIVHDVIDIDRDDDSADLVLTGEKVGKGDKGKAKESIHDGYDDHQNMEVFSVSGDEPGSDSSCDDDDDDYSDLFSEDYMDVDQYALIQTHFDNVDIPPGIEAPIPWLADYGLGPKKTNSDLLSPWSDTQSDAKNSHVTDSSQPSLSIEPTNPDIQGPSAGSSSLQIKLDAIFKDPSAIELSSPPVLSQTALSKKKSNASQCKRRKLKFAFGMGSSKSSGPSESKKKPNIFSANHGFVHNLEPKKLPHVGGPLHWGHFENSMKAAGSNSPYHHPHFVGPSFHFPGPPFHFPGPEFVNDLWMKSTYHFQPLPSFPANSSVLDTFIPLHAHPPEQLFDNSWVHNSVGDGNNGTTANCTVATISDEARDEILRKFQNFKQFDTIEDASDHYFVHANSSMKQHPKNWAKRIQEEWKSLEKDLPDTIFVRVYESRIDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPQVHYHSGGLRLNPNLYNCGKVCLSLLNTWSGHKNEKWLPGVSTILQVLVSIQGLILNAKPYFNEPGYARLSGSKDGEMLSLQYNEDTFILSLKTMVYIIRRPPKNFEEFVIGHFCSRALDILVACKAYMDGAQVGCLVKGGVQDVDQGDKSCSDQFKTSLAPYVDMLVREFTQIGAKDCDKVFPSTAANNPLGEMPVAATIS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1810 722 Gene3D Ubiquitin Conjugating Enzyme 415 694 IPR016135 -
Ssu3g1810 722 MobiDBLite consensus disorder prediction 77 128 - -
Ssu3g1810 722 MobiDBLite consensus disorder prediction 1 16 - -
Ssu3g1810 722 Pfam Ubiquitin-conjugating enzyme 460 579 IPR000608 -
Ssu3g1810 722 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 456 616 IPR000608 -
Ssu3g1810 722 MobiDBLite consensus disorder prediction 20 34 - -
Ssu3g1810 722 MobiDBLite consensus disorder prediction 77 100 - -
Ssu3g1810 722 SUPERFAMILY UBC-like 445 623 IPR016135 -
Ssu3g1810 722 MobiDBLite consensus disorder prediction 1 53 - -
Ssu3g1810 722 MobiDBLite consensus disorder prediction 114 128 - -
Ssu3g1810 722 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 39 707 - -
Ssu3g1810 722 MobiDBLite consensus disorder prediction 176 216 - -
Ssu3g1810 722 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 39 707 - -
Ssu3g1810 722 CDD UBCc 459 585 IPR000608 -
Ssu3g1810 722 SMART ubc_7 459 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1810 Ssu-Chr3 56653072 56657927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1810 412 699 Miscellaneous Gene Families AT2G33770 48.621 4.09e-85 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1810 K10581 - ccaj:109805727 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1810 3 56653072 56657927 Ssu3g1810 3 56653072 56657927 ECH