Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1796 ATGGGGTCCTTTAACATGGAGAAGAAATGGCAATTTCCTCTCATTATGATCTCAATTGTGTGCATATTCTTTCTTGCTACATGCTTCAACATGGGGCTTGTCTCTACAATTCACCGCTTCGATTCAATACTCTTTTTCCCACCTCGTCTAGCCATAAACCAAACTGCTCCAATTTTTGTGGAGACAAAGATTTCTGCTCCTGCTCCAGCTGCAGCCCCACCTCTACCTCCTGCCGTGCCTGCAATTCCTCGTTTTGCTTATTTGATTTCTGGCTCAAAAGGTGATTTGGAGAATATTTGGAGAACTCTTCTTGCCCTTTACCATCCACTGAACTATTATGTTGTTCATTTGGACCTTGAGTCACCACTAGAGGTGAGGTTGGAGCTTGCTTCTAGAATTGAGAAGCAGCCTGTCTTCGCTGAGGTTGGAAATGTTTTCATGATTCAGAAAGCTAATATGGTCACTTACAGAGGACCAACCATGATTTCTCACACTCTTCATGCTTGTGCCATTCTGCTCAAGAGAATTAAAGACTGGGATTGGTTTATTAACCTTAGTGCTTCAGATTATCCTCTTGTGACTCAAGATGATCTTCTATATACTTTTTCTGATTTAAACAGAAGCCTTAACTTCATTGAGCACACAAGTCGTTTGGGATGGAAGCTGGAAAAACGAGCAATGCCTTTGATTATAGACCCAGGTCTTTACAAGACAAACAAGTCTGATGTTTTTTGGGTTAGTCCTAAGAGAACTTTGCCAAcagcatttaaactatttactgGTTCAGCATGGGTGGTTTTATCACGTGCATTTGTAGAATATGTTGTCTGGGGTTGGGATAATCTACCAAGGAACCTTCTTATGTACTACACTAATTTCATCTCCTCCCCTGAAGGCTACTTTCAGACTGTTGTATGCAATGATCCAGAACTAGCCAAAACTGTTGTAAACAATGACTTGCATTATATTTCATGGGACGTCCCTCCCAAACAGCACCCTCATGTCCTTACCATCAATGACACAAACAAGATGATTGCAAGCAATGCTGCCTTTGCTAGGAAATTTAAGCAAGATGATCCAGTTTTGGATgtgattgataaaaatttactaCGTAGGGAAAAGGAACAACTATTCACCCCAGGTGGTTGGTGTTCTGGCAATCCCAAATGTTCCAAGGTTGGAGACATTTACAAGATCAGACCTGGTCCAGGATCTCAAAGGCTTCGTCTCCTTGTAACTAGGCTAACTAAGATGGCTAAACTTGGTCAGAAACAGTGTAAATAG 1284 0.405 MGSFNMEKKWQFPLIMISIVCIFFLATCFNMGLVSTIHRFDSILFFPPRLAINQTAPIFVETKISAPAPAAAPPLPPAVPAIPRFAYLISGSKGDLENIWRTLLALYHPLNYYVVHLDLESPLEVRLELASRIEKQPVFAEVGNVFMIQKANMVTYRGPTMISHTLHACAILLKRIKDWDWFINLSASDYPLVTQDDLLYTFSDLNRSLNFIEHTSRLGWKLEKRAMPLIIDPGLYKTNKSDVFWVSPKRTLPTAFKLFTGSAWVVLSRAFVEYVVWGWDNLPRNLLMYYTNFISSPEGYFQTVVCNDPELAKTVVNNDLHYISWDVPPKQHPHVLTINDTNKMIASNAAFARKFKQDDPVLDVIDKNLLRREKEQLFTPGGWCSGNPKCSKVGDIYKIRPGPGSQRLRLLVTRLTKMAKLGQKQCK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1796 427 Pfam Core-2/I-Branching enzyme 85 344 IPR003406 GO:0016020|GO:0016757
Ssu3g1796 427 PANTHER GLYCOSYLTRANSFERASE 4 427 IPR044610 GO:0015020
Ssu3g1796 427 PANTHER OS01G0201100 PROTEIN 4 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1796 Ssu-Chr3 55980925 55983668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1796 1 427 Glycosyltransferase AT4G27480 65.808 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1796 - - gmx:100781728 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1796 3 55980925 55983668 Ssu3g1796 3 55980925 55983668 ECH