Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1793 ATGGCGGTTGAGGTTGTGGAATTTGAGATGGTTCAAGGGCCAGGGGAAAACAGTGCAGAAGAAGACAGGTCTGTTtcacaagaaaatgaaaatgggaAATTGGAACAAGATGCAGGAGTTGCAGAGCCCATAAAATTTGGGTCACATGGAGATGAATCTGCTAAAACTGAAGGGAATGCTGTTTCAGAGTCCAATGTCCCCAAAGATGCAGTTGAAGAGTGGCCCGCGCCGAAGCAGATACATTCGTTTTATTTTGTTAGGTTCCGGCCTTATGATGATCCCAACATTAAAGCTAAACTTGATAAGCTTGATAAAGAGATTAGCCAGAAAAATCAAGCGCGAATTCAGGTTACCGATGCTCTAAGGGCGAAAAGGTCAGAACGAACAGAGTTGATTTCTCAGATTAAGTCTCTAAGAGATGACAATAGGCAATTTCAGAGTATTGtcgatgaaaaaataaaagagattgaACCTCTGCAGCAGGCACTGGGCAAGCTGCGTACTGCAAATAATGCAGGTCGGGGGGGTGGATTATGCTCATCCGAGGAGGAACTCAACAATCTTATTAATAGCTTACAATACCGCATTCAGCATGAGAGCATTCCATTGGCTGAAGAAAAACAAATCCTTCGAGAAATCAAACAACTTGAGGGGACAAGGGAGAAGGTTATTGCTAATGCTGCCATGAGAGCCAAAGTACAGGATTCTATGGGGCAGAAAGAAGCCATTCAAGATCAGGTTAAGCTTATAGGTGGTGATTTGGATGGAGTTAAAAAAGAGAGGCAAGCAATTCGGTCCAAAATCAAGCAACTTGATGATGCAGTAAAAGCCTTAGACAAGGATATCCTGTCTTTACAGGATGAATTAGGATCTGTTACTGAAAAGAGGGAAAAAGCTTATGAGAGCATTCAGCAGCTAAGAAAAGAACGCGATCAGGGGAACTCCTATTTCTATCAAAGTCGTACAATTTTGAACAAAGCACGGGAGCTTGCTGCAAAGAAAGATATTAATGCGCTTGAGGAACTTTCACAAACAGAGGTTGAGAAAGCTATGTCACTCTGGAACAGTGACAAATCCTTTAGGAATGACTACGAGAAAAGACTTTTGCCATCGCTGGACATGCGGCAGTTGAGTAGGGATGGACGGATGAGGAACCCAGATGAAAAGCCTCTGCTGGAAGAACTGAAACCTGCCGAAACTGATACATTACGGAAAAGCAGTATAAAACAGCTAAAGGAGGAGCCTAAATCATCTCCAGAAGAAGCTGTACCCACTCTGAAGGTTCAGaaagaaaccaaaaagaaaggaagagattTGAAATCCAATCTGGACAATAAGGATTTAGAAGATGCTGAtgaatatgaatttgaattgcCAAAGGAGACTCCTGTGAAGGAGCCTCCGATTGATCCGGAAAAGCTGAAAGAGATGAAAAGAGAAGAGGAAATTGTGAAAGCAAAGCAGGCcttggaaaggaagaaaaaactAGCGGAGAAAGCCGCAGCCAAAGCAGCTATCAGGGTACAAAAGGAAGCTGAGAAGAAGCTCAAGGAACGCGAGAAGAAAGCAAAGAAAGCGGCTGGTGGCTCTGGAGCTGTTCCATATCCCGAGGAGCCAGCACATGAAGTTGTGGAGGTTACGGAACAGAAGACCAATGATAACGTAGAAGCCTCGGTTCTGACCAAGGAAAAGGTTCAAAAGGAGAGCAGTGTTAGGTCCCGGAGTCGAGTGAAAGGATTGAAAGGCCCTGACTCAATCCCAAAAGCTATTTTGAAGAGGAAAAGGTCTAACAATTACTGGATATGGGTTGCATCTTGTGCTTTGCTAGTCCTGGCCTCATTGGTGCTTGGATGCATCATTCTTTCTTGA 1869 0.4168 MAVEVVEFEMVQGPGENSAEEDRSVSQENENGKLEQDAGVAEPIKFGSHGDESAKTEGNAVSESNVPKDAVEEWPAPKQIHSFYFVRFRPYDDPNIKAKLDKLDKEISQKNQARIQVTDALRAKRSERTELISQIKSLRDDNRQFQSIVDEKIKEIEPLQQALGKLRTANNAGRGGGLCSSEEELNNLINSLQYRIQHESIPLAEEKQILREIKQLEGTREKVIANAAMRAKVQDSMGQKEAIQDQVKLIGGDLDGVKKERQAIRSKIKQLDDAVKALDKDILSLQDELGSVTEKREKAYESIQQLRKERDQGNSYFYQSRTILNKARELAAKKDINALEELSQTEVEKAMSLWNSDKSFRNDYEKRLLPSLDMRQLSRDGRMRNPDEKPLLEELKPAETDTLRKSSIKQLKEEPKSSPEEAVPTLKVQKETKKKGRDLKSNLDNKDLEDADEYEFELPKETPVKEPPIDPEKLKEMKREEEIVKAKQALERKKKLAEKAAAKAAIRVQKEAEKKLKEREKKAKKAAGGSGAVPYPEEPAHEVVEVTEQKTNDNVEASVLTKEKVQKESSVRSRSRVKGLKGPDSIPKAILKRKRSNNYWIWVASCALLVLASLVLGCIILS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1793 622 PANTHER PROTON PUMP-INTERACTOR 1-LIKE 7 615 - -
Ssu3g1793 622 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 7 615 - -
Ssu3g1793 622 Coils Coil 479 522 - -
Ssu3g1793 622 MobiDBLite consensus disorder prediction 516 538 - -
Ssu3g1793 622 MobiDBLite consensus disorder prediction 457 477 - -
Ssu3g1793 622 MobiDBLite consensus disorder prediction 375 447 - -
Ssu3g1793 622 MobiDBLite consensus disorder prediction 1 68 - -
Ssu3g1793 622 Coils Coil 254 309 - -
Ssu3g1793 622 MobiDBLite consensus disorder prediction 561 580 - -
Ssu3g1793 622 MobiDBLite consensus disorder prediction 375 477 - -
Ssu3g1793 622 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1793 Ssu-Chr3 55897541 55901794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1793 - - gmx:100793963 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1793 3 55897541 55901794 Ssu3g1793 3 55897541 55901794 ECH