Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1790 ATGGAGTCTATATTTGGGGGAGACTCATGGATCAGTGCTAAAACTCAGCGTTGCATTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCAAAGCAACCCTGAAAAAGGGGTTGCAGGTGCTGTGCCTATTCCCCCTGATGATGCTGGGAAAGAAGTCGTTATTGCTGCATTAGTATACGTATATTCTAGTGGTAGCAGGTTGGCTCAAAGGCTAATATTTGGACATACAAAGCACGGGGAcctaagaaaatatttatctgGCTTTTTTGACACCACAGTGGAGAGCAAAAGAGAGACACACAGTTATGTTGAAATTTCCGAGTCTCTTGGTGTTGATAGGCCATcagatattttatttgtaactgATGTTTATCAAGAAGCTACAGCTGCCAAGACAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCTGGAAATGCACCCCTCCCTGAAAATCAGGGCTTCAAGATGAATTCCTTCTCTGAGATCTGA 510 0.4059 MESIFGGDSWISAKTQRCIVLDIEGTTTPISFVTEVQSNPEKGVAGAVPIPPDDAGKEVVIAALVYVYSSGSRLAQRLIFGHTKHGDLRKYLSGFFDTTVESKRETHSYVEISESLGVDRPSDILFVTDVYQEATAAKTAGLEVIISVRPGNAPLPENQGFKMNSFSEI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1790 169 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 65 169 IPR017714 GO:0005737|GO:0019509|GO:0046872
Ssu3g1790 169 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 35 65 IPR017714 GO:0005737|GO:0019509|GO:0046872
Ssu3g1790 169 Gene3D - 50 169 IPR023214 -
Ssu3g1790 169 SUPERFAMILY HAD-like 16 158 IPR036412 -
Ssu3g1790 169 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 65 169 - -
Ssu3g1790 169 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 35 65 - -
Ssu3g1790 169 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 16 36 IPR017714 GO:0005737|GO:0019509|GO:0046872
Ssu3g1790 169 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1790 Ssu-Chr3 55707469 55710527 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1790 K16054 - vvi:100257258 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1790 3 55707469 55710527 Ssu3g1790 3 55707469 55710527 ECH