Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1750 ATGGAAAGTGGGGTTGTGGCTGCGAATAACAATAACTATGAGTCCAAAACAACTTCCACCATCACCATTAAGGGGATTCTCAGCCTCCTAGTGGAAAGCATTGATGAGAATTGTGATGGTGGAAGCAAGAGAGTTATTTCTCTTGGTATGGGTGACCCAACTCTTGCCACTTGTTTCCACACACCAAAGGTTGTTGAAGAAGCTGTTGCTGCTACTCTTCAGTCTCACAAGTTTCATGGCTATGCTCCCACTGCTGGTCTTCTCCAGGCCAGAATTGCAATTGCTGAATATCTATCTCGTGACCTTCCTTACCAATTATCAAGTGATGATGTTTTCATCACTTGTGGATGCACACAAGCCATTGATGTTTCAGTGGCGATGCTTGCTCGCCCCAGTGCAAACATCTTGCTTCCAAGACCAGGCTTCCCAATCTATGAACTTTGTTGTGCATTTAGAGGGGTCGAAGTGAGGCATTATGATCTGCTTCCAGAGAAAGGTTGGGAGGTTGATCTAGATGCTGTTGAAGCTCTTGCTGATCAGAACACGGTTGCGTTGGTGATTATAAACCCTGGGAATCCTTGTGGGAATGTGTACAGTTACCATCATTTGGAAAAGATTGCTGAAACTGCAAAACGGATAGGAACAATTGTGATTTCTGATGAAGTTTATGGTCACCTTGCATTTGGGGAGAAGCCTTTTGTGCCAATGGGAGTTTTTGGCTCTGTTGTTCCTGTTCTCACTCTTGGCTCACTGTCTAAGAGATGGATAGTTCCAGGATGGAGGCTTGGTTGGTTTGTGACAAATGATCCATCTGGCACTTTTAGAAAACCAAAGGTAGTTGAGCgcattaaaaagtattttgatCTTTTGGGAGGTCCAGCCACCTTCATCCagGCAGCTGTACCTCAGATAATTGCACATACTGAAGAGGTTTTCTTCAAGAAAACCATTGATAATTTGAGGCATAGCGCAGATATTTGTTGTAAAGAGATAGAAAATATTCCATGCATTTTTTGCCCTTACAAACCAGAAGGGTCCATGGCTATGATGGTGAAACTAAACCTTTCACTTCTAGAAGATATTAGCGATGATATTGACTTCTGTTTCAAACTTGCAAAGGAGGAATCTGTTATCATTCTTCCAGGAACTGCAGTAGGGCTAAAAGATTGGCTTCGTATTACTTTTGCTGCTGATCCACCTGCTCTTGGAGAGGGTATGAGAAGGATAAAATCTTTCTATCAAAGGCATGCAAGAAAATTGTAA 1263 0.4212 MESGVVAANNNNYESKTTSTITIKGILSLLVESIDENCDGGSKRVISLGMGDPTLATCFHTPKVVEEAVAATLQSHKFHGYAPTAGLLQARIAIAEYLSRDLPYQLSSDDVFITCGCTQAIDVSVAMLARPSANILLPRPGFPIYELCCAFRGVEVRHYDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYHHLEKIAETAKRIGTIVISDEVYGHLAFGEKPFVPMGVFGSVVPVLTLGSLSKRWIVPGWRLGWFVTNDPSGTFRKPKVVERIKKYFDLLGGPATFIQAAVPQIIAHTEEVFFKKTIDNLRHSADICCKEIENIPCIFCPYKPEGSMAMMVKLNLSLLEDISDDIDFCFKLAKEESVIILPGTAVGLKDWLRITFAADPPALGEGMRRIKSFYQRHARKL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1750 420 Gene3D Aspartate Aminotransferase, domain 1 47 412 IPR015422 GO:0003824
Ssu3g1750 420 SUPERFAMILY PLP-dependent transferases 41 415 IPR015424 -
Ssu3g1750 420 PIRSF Tyr_transaminase 2 420 IPR005958 GO:0006520|GO:0008483|GO:0030170
Ssu3g1750 420 CDD AAT_like 46 410 - -
Ssu3g1750 420 PANTHER TYROSINE AMINOTRANSFERASE 12 418 - -
Ssu3g1750 420 TIGRFAM tyr_nico_aTase: tyrosine/nicotianamine family aminotransferase 14 417 IPR005958 GO:0006520|GO:0008483|GO:0030170
Ssu3g1750 420 Pfam Aminotransferase class I and II 44 399 IPR004839 GO:0009058|GO:0030170
Ssu3g1750 420 Gene3D - 64 309 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1750 Ssu-Chr3 53392784 53397883 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1750 K00815 - gmx:732650 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1750 3 53392784 53397883 Ssu3g1750 3 53392784 53397883 ECH