LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g1740	ATGGACACCCCAATCGCCGGCGGCGACTTCGACTACCAGTCCGGCTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGCGGCGCAGAACAGCCCCCTTATCTGCCCCTACGGCCTCTACGCCGAGCAAATCTCCGGCACCTCCTTCACCTCCCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATAAAACCATCAGTGACCCACGAACCGTTCAAGCCTCGGGTCCCTAGTAATGGGAGAATTTTGAGTGAGTTCAACAACTCCAACAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCATGGATGCACCCGATTCGCCAACGGATTTCATTGATGGGTTGTCCACCATTTGTGGTTCTGGCAGCTCCTTCATGCGCCATGGATATGCTATTCACATGTACACTGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCCGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCTTTATCACTACTGAATGTGGAAGGTTGAAAGTTTGTCCGGGTGAAATTGCTATATTACCTCAAGGTTTTCGTTATTCTGTGAATCTGCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGTCTTGCTGCTCCGAGGGATTTCCTTGTTCCTACTGCATGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAGTTTGGTGGTGAACTTTTTTCTGCAGTACAAGATTTCTCTCCCTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATAAGTATGATTTAAGCAAATTCTGCCCTTATAGTACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCGCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTAATTCATGGTGGCTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCTAGCCTCCATAACTGTATGACTCCCCATGGTCCTGATACCAAATCATATGAGGCTACCATTGCACGAGGGAATGATGTAGGACCCTACAAGATCACTGATACAATGGCTTTTATGTTTGAATCGAGTCTGATACCCCGGATCAGTCAATGGGCCCTAGAATCACCTTTCTTGGATCAAGATTATTACCAATGTTGGATTGGCCTGAGATCTCATTTTACAGTTACTGAGACATTTGAAAAACCGACCTTGCAGAATGGTCAGTGA	1365	0.4659	MDTPIAGGDFDYQSGFGNHFSSEALAGALPAAQNSPLICPYGLYAEQISGTSFTSPRNRNLFSWFYRIKPSVTHEPFKPRVPSNGRILSEFNNSNSSANPTQLRWKPMDAPDSPTDFIDGLSTICGSGSSFMRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQQGRLFITTECGRLKVCPGEIAILPQGFRYSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEDKSYPGYTIVQKFGGELFSAVQDFSPFNVVAWHGNYVPYKYDLSKFCPYSTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFAPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKADGFLPGGASLHNCMTPHGPDTKSYEATIARGNDVGPYKITDTMAFMFESSLIPRISQWALESPFLDQDYYQCWIGLRSHFTVTETFEKPTLQNGQ	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g1740	454	Pfam	Homogentisate 1,2-dioxygenase C-terminal	285	439	IPR046451	-
	Ssu3g1740	454	Pfam	Homogentisate 1,2-dioxygenase N-terminal	12	284	IPR046452	-
	Ssu3g1740	454	Gene3D	Jelly Rolls	273	410	IPR014710	-
	Ssu3g1740	454	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	9	440	IPR005708	GO:0004411\|GO:0006559\|GO:0006570
	Ssu3g1740	454	SUPERFAMILY	RmlC-like cupins	9	440	IPR011051	-
	Ssu3g1740	454	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	9	440	-	-
	Ssu3g1740	454	TIGRFAM	hmgA: homogentisate 1,2-dioxygenase	10	439	IPR005708	GO:0004411\|GO:0006559\|GO:0006570
	Ssu3g1740	454	CDD	cupin_HGO_N	103	211	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g1740	K00451		-	gmx:100801346	899.042

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g1740	3	53178623	53184505	Ssu3g1740	3	53178623	53184505	ECH