Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1730 ATGAGTGTTCGAATTGAGGCGGGTTTGGTTTTGGCGGGTGGCTTATTCTGGGTATGTCATTCTAACTCCTTCTTTGTTGAGCTCGTTGCATCCCTTGGTGCACAGTGGTGTGAGATGTATCATGGTGGACTTTGTGGCTGGATGGGTGGTGAGCAGTGGTTTGAGAAGacgaaaacaaaaaaagagagcaaaGCAAAAGTGAAACACGTAACCAAGTTCCCTTCCTTTCACTCCCAATCGAAACCCTCCACCTCTGCTCCGAAGCCGAAAACCCCGCTTCCTTACTCCTTTTCCTTCTCCTCGCGCCACATAGAAAATCCGAAAACACCTTCCCTCCCGAAACCGCCCCAACATCACGAGACTTCACGGTTCCCGCCAAAACCGATGCTAGGGTTCACTCTTCCGCTTCAGCTTCGCTGCTGCCACCCCCACCAACAAACGCCCCTTCCAAACTCGGTTTCGCCCAAACCCTGCTACCCGCCCATTGTTCCTTCCCTTCCTCGGCCCCGAACCGGTCCCGGTCTGTGCGCGAGTTTCCCGGTCGGGCCCGGTTCGGTTTTTTCGGAGGATGAGCTGGACGTGGAGCTGGGGCGGCTCCTGGCGCTGCTGCCGGAGGAGATGCGGCGGCGCGTGAGCGACCACCCGGAGCTGCCGCGGCTGATCGAGGTGGTGATGGATTTGGGCCGGAAACCGCTCGCGAGGTTTCCGGCCGGTGATTTTGTGATATCGGAGTATCCTATCACGGTTCAGGATATCGAGCACGCCACTGCGCAGGTTGGTGACTTTGCTGTTGATAATCGAGCAGGAATCAGCAGGACATTGCATCGGATTAGTGCCATCAGAAATCGCAAGGGCACAATTATTGGTCTAACATGTCGAGTTGGCAGGGCAATTTCAGGAAGTGCCAAGTTGTTGCAAGATTTGATTCAAGATGGGGCTTCTTTGTTGCTCATTGGGCCTCCAGGGGTAGGCAAAACCACAATTATTAGGGAAATAGCTAGGATGCTGGCAAATGATTACAGGAAGCGTGTGATGATTGTTGACACCTCCAATGAAATTGGGGGTGATGGTGATATACCTCATACTGGAATAGGCAATGCTCGACGTATGCAAGTCCCCAACTCTGATATGCAACATAAGGTACTGATAGAAGCAGTGGAAAACCACATGCCACAAGTGATTGTAATTGATGAAATTGGTACAAAACTTGAAGCAATGGCTGCGAGCACAATTGCACAACGTGGGATTCAGCTTGTTGCCACTGCTCATGGAATCACAATTGAGAATCTGATAATGAATCCTTCATTAGAGATGCTTGTTGGAGGAATACAGAGTGTGACACTTGGGGATGAAGAGGCCAGTCGCAGGGGTGTTCAGAAGACAGTACTGGAGAGGAAAGGCCCATCTACGTTTAGTTGTGGAGTGGAGATTATTTCAAAGACAGAGTTGCGCATTCACCGTAGCCTTGAAACAACTGTAGATGCTATTCTTTCTGGTCATTTTCCAAATGTAGAAATACGCAAGATGAAGTCTCAAGAACAGGAAGAGATTTTACAAGATGGACCTGTTAGTGACAGTTCTGTTGAAACAAATAGTGAAATTATGTTTGAAGATGTTACGAAGGGGGCTGATGGCCAAACCGACCAAAATGAATCACTTTTGAAGTTGCCTATTAGCTTGGTGGAAGATTCCTGGCAGCATAAATTGCCAGTTCGCCTGTTTTGTTATGGGATTTTAGAGGCAACTGTTATTCAAGGGATTAAACAGTTGAAAATGAATGATGCGGCCATTCAATTGACTGATAACATTAGTGAAGCAAATGCTTTACTTGCCTTGCAATCCAAGCTTAAAAAGAATCCAGGGATTCAGGCTGCTGCTAAATCTCATGATATTCCTGTTTTTGTGACGAAGGTAATAATTCTCTAA 1926 0.4766 MSVRIEAGLVLAGGLFWVCHSNSFFVELVASLGAQWCEMYHGGLCGWMGGEQWFEKTKTKKESKAKVKHVTKFPSFHSQSKPSTSAPKPKTPLPYSFSFSSRHIENPKTPSLPKPPQHHETSRFPPKPMLGFTLPLQLRCCHPHQQTPLPNSVSPKPCYPPIVPSLPRPRTGPGLCASFPVGPGSVFSEDELDVELGRLLALLPEEMRRRVSDHPELPRLIEVVMDLGRKPLARFPAGDFVISEYPITVQDIEHATAQVGDFAVDNRAGISRTLHRISAIRNRKGTIIGLTCRVGRAISGSAKLLQDLIQDGASLLLIGPPGVGKTTIIREIARMLANDYRKRVMIVDTSNEIGGDGDIPHTGIGNARRMQVPNSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLEMLVGGIQSVTLGDEEASRRGVQKTVLERKGPSTFSCGVEIISKTELRIHRSLETTVDAILSGHFPNVEIRKMKSQEQEEILQDGPVSDSSVETNSEIMFEDVTKGADGQTDQNESLLKLPISLVEDSWQHKLPVRLFCYGILEATVIQGIKQLKMNDAAIQLTDNISEANALLALQSKLKKNPGIQAAAKSHDIPVFVTKVIIL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1730 641 CDD AAA 312 401 - -
Ssu3g1730 641 MobiDBLite consensus disorder prediction 64 90 - -
Ssu3g1730 641 MobiDBLite consensus disorder prediction 104 125 - -
Ssu3g1730 641 Gene3D - 293 454 IPR027417 -
Ssu3g1730 641 SMART AAA_5 311 442 IPR003593 -
Ssu3g1730 641 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 188 637 - -
Ssu3g1730 641 PANTHER KINASE-RELATED 188 637 - -
Ssu3g1730 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 454 IPR027417 -
Ssu3g1730 641 MobiDBLite consensus disorder prediction 73 90 - -
Ssu3g1730 641 Pfam Sporulation stage III, protein AA 289 441 IPR045735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1730 Ssu-Chr3 52688414 52695912 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1730 - - gmx:100807394 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1730 3 52688414 52695912 Ssu3g1730 3 52688414 52695912 ECH