Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1719 ATGTCCGTTTCATTTTCTCCCTTACCTCACATTTCCAACACCGATTCGCGCCTTCTCTTGACCAACATGGTGGATTGCACTTGTGCATTTTACCCTCCAACAACTCTGCAAGTGCTTCCTCTGCCCAAGACTGCACCCCCCAAGTTAACCTTTGTTTGTTCCTCCCAAAGGGTTCTCCCCATTGAGGAGCTTCTGCTAAGTGCTGGGGATGGGGACCCCCCAAATGTTAGTGTTGATTCTTCTGATTATTTGAACGATGGGAATGGTGGGGTTGTTGGCCTTGGTGACTCTCTTAGCGAAGAGGTTCTTAAGGAGAGGATTAGAAGAATGAGAATAGGGCTGGCAAACAAAGGAAGAGTGCCTTGGAACAAAGGAAGGAAACACAGTGCAGAGACCCGGGAGCGAATCAGGCAAAGAACTTCAGAGGCTTTGAGGGACCCCAAGGTAAGGAAGAAGATGGCTGAACATCCCCAGTCTCATAGTGATCAAACCAAGGCAAAGATAAGTGATTCACTGAGACGTGTTTGGCATGAGCGGCTGAAGTCAAAGCGGTTGGTGGAACAATTTTTGCTTTCATGGGCACAAAACATAGCAAATGCAGCCAAGAAAGGAGGGAGTGGTCAGGAAGAGCTAGATTGGGATAGCtacaataagataaaacaacAGTTGGAACTCCATCAACTTCTGCAGGCTgaggaaaagggaaaagaaaagctGATGGCAGTTACTGGAGCAAAGAATATCGTCCAGTCATGGAGGGACAGCATAGCCAAAGCAGCTAAGAAAGGTGGGAGTGGGGAACAAGAACTTGACTGGGATAGTTatgaaaagatacaagaagaaatgGTTTGCCTCCATCAACTTCAGCGTACTACAGAAAAGGCAAAGGAAAAAGAGATGGCAAGGGTAAAAGCAGAGAAAGCAGCACagataaaagcaattaaaaggGTAATCCTCACTCAGAAGAGAAAAGATCATCAAGAGAGGGCTAAAGTAAAAGGGAATATAAAGAGTCATCCCTGCAGAAATGTAAAGGAAGGCAAAGGTTCCTTGGAAGTTACGCAAGAGTTCAAACTTTGCACTAAATCAACCAAGATTCATATAAGTAAGAACATCAACGGTGAAGTACCTAGAGAAGGAGGCGTTTTTAATTCCATTATTCCAACCCACAATAAATTGGATCTAGAGCTTATCAAGAGAGAAAAAGTGCAGAAAGAAGTATCACTTGCAGATCAGATCCAAGCTGCTAGAGACAAAAAAGGTAAACTCCACTGA 1275 0.4227 MSVSFSPLPHISNTDSRLLLTNMVDCTCAFYPPTTLQVLPLPKTAPPKLTFVCSSQRVLPIEELLLSAGDGDPPNVSVDSSDYLNDGNGGVVGLGDSLSEEVLKERIRRMRIGLANKGRVPWNKGRKHSAETRERIRQRTSEALRDPKVRKKMAEHPQSHSDQTKAKISDSLRRVWHERLKSKRLVEQFLLSWAQNIANAAKKGGSGQEELDWDSYNKIKQQLELHQLLQAEEKGKEKLMAVTGAKNIVQSWRDSIAKAAKKGGSGEQELDWDSYEKIQEEMVCLHQLQRTTEKAKEKEMARVKAEKAAQIKAIKRVILTQKRKDHQERAKVKGNIKSHPCRNVKEGKGSLEVTQEFKLCTKSTKIHISKNINGEVPREGGVFNSIIPTHNKLDLELIKREKVQKEVSLADQIQAARDKKGKLH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1719 424 MobiDBLite consensus disorder prediction 124 167 - -
Ssu3g1719 424 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 247 424 - -
Ssu3g1719 424 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE PROTEIN 2 241 - -
Ssu3g1719 424 Pfam NUMOD3 motif 160 173 IPR003611 GO:0003677
Ssu3g1719 424 Pfam NUMOD3 motif 111 137 IPR003611 GO:0003677
Ssu3g1719 424 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE PROTEIN 247 424 - -
Ssu3g1719 424 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 2 241 - -
Ssu3g1719 424 Coils Coil 288 308 - -
Ssu3g1719 424 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1719 Ssu-Chr3 52246265 52249775 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1719 - - gmx:100790420 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1719 3 52246265 52249775 Ssu3g1719 3 52246265 52249775 ECH