Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1714 ATGCGATATTTCAATGTGATGATCCTTGGGCCGACCCAGTCGCCTTATGAAGGGGGAGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTaggtttttaacaaaaatatatcatcCGAACATTGATAAGCTTGGCAGGATTTGTCTTGATATTCTGAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACTGTTCTATTAAGCATTCAGGCCCTATTGAGTGCACCAAACCCTGATGATCCGCTTTCTGAGAACATTGCCAAGCATTGGAAATCTAATGAGGCTGAGGCTGTCGAAACAGCGAAGGAATGGACCCGATTATATGCTAGTGGTGCCTGA 363 0.4187 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1714 120 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 117 - -
Ssu3g1714 120 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 45 60 IPR023313 -
Ssu3g1714 120 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 118 IPR000608 -
Ssu3g1714 120 Pfam Ubiquitin-conjugating enzyme 2 112 IPR000608 -
Ssu3g1714 120 Gene3D Ubiquitin Conjugating Enzyme 1 120 IPR016135 -
Ssu3g1714 120 SMART ubc_7 1 118 - -
Ssu3g1714 120 CDD UBCc 4 113 IPR000608 -
Ssu3g1714 120 SUPERFAMILY UBC-like 1 118 IPR016135 -
Ssu3g1714 120 PANTHER BNAC02G25260D PROTEIN 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1714 Ssu-Chr3 52008651 52014442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1714 8 85 Miscellaneous Gene Families AT3G17000 32.143 2.83e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1714 K10580 - ath:AT1G16890 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1714 3 52008651 52014442 Ssu3g1714 3 52008651 52014442 ECH