Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1049 ATGTCTCGAAGATATGATAGCCGTACAACAATCTTCTCCCCTGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAGGCCATTGGGAATGCTGGTACTGCAATAGGGATCTTGTCAAAAGATGGGGTAGTTCTGGTTGGTGAAAAGAAGGTCACATCCAAGCTGCTTCAAACTTCAACTTCCACTGAGAAAATGTACAAGATTGATGATCACGTTGCATGTGCCGTGGCTGGAATTATGTCTGATGCCAACATCCTAATCAATACTGCTAGGATTCAGGCACAACGTTATGCATTTGCTTACCAAGAGCCAATGCCCGTTGAGCAGTTGGTTCAATCTCTTTGTGACACTAAGCAAGGTTACACACAATTTGGTGGTCTTCGGCCATTTGGAGTCTCATTCCTCTTCGCCGGTTGGGACAAGAATTTTGGCTTTCAACTTTACACAAGTGACCCCAGTGGAAATTATGGTGGTTGGAAAGCAGCGGCTATTGGTGCCAACAACCAGGCAGCACAGTCAATTCTGAAACAGGACTACAAGGATGATATCACAAGGGAAGAAGCAGTTCAACTTGCACTGAAGGTACTAAGTAAAACTATGGACAGCACAAGTCTTACCTCTGAAAAGCTTGAACTTGCTGAGGTTTTGCTCTCGCCTTCTGGAAAAGTTAAGTATCAAGTTTGCTCCCCAGAAACCCTGACTAAGCTGTTGGTGAAGTTTGGGGTGACCCAACCAGCAATAGACACTGCTTAG 753 0.4502 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARIQAQRYAFAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYTSDPSGNYGGWKAAAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVLLSPSGKVKYQVCSPETLTKLLVKFGVTQPAIDTA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1049 250 CDD proteasome_alpha_type_4 3 215 - -
Ssu3g1049 250 ProSitePatterns Proteasome alpha-type subunits signature. 5 27 IPR000426 GO:0006511|GO:0019773
Ssu3g1049 250 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-4-A 1 249 IPR034647 GO:0019773
Ssu3g1049 250 Pfam Proteasome subunit A N-terminal signature 5 27 IPR000426 GO:0006511|GO:0019773
Ssu3g1049 250 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 233 IPR029055 -
Ssu3g1049 250 Pfam Proteasome subunit 30 214 IPR001353 GO:0005839|GO:0051603
Ssu3g1049 250 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 249 - -
Ssu3g1049 250 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 246 IPR029055 -
Ssu3g1049 250 ProSiteProfiles Proteasome alpha-type subunit profile. 20 237 IPR023332 -
Ssu3g1049 250 SMART Proteasome_A_N_2 5 27 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1049 Ssu-Chr3 24620832 24621584 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1049 K02728 - gmx:100793282 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1049 3 24620832 24621584 Ssu4g2426 4 60595303 60596055 PCT