Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0918 ATGTCAGGCTTGTATAACCCCAACTTCTCTCCTGCTAGAGCTGCTTCTCCTCAGATTAGGAGCAATCCAGAAGTGGACAGTCAGTACCTATCAGAGTTGCTGGCAGAGCATCAGAAGCTTGGACCCTTCATGCAAGTGCTTCCCATATGCAGTCGCCTCCTAAATCAAGAAATATTAAGAGTTTCTGGAATGTTGTCCAACCAAGGTTTTGGTGACTTCGACAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTTATGTCCAATGTCAGTGGGACAGGGTTGGGTGGATGGAATAGCCTTCAGCAGGAGAGATTATGTGGACCCCCTGGAATGACAATGGACTGGCAAGGTGCACCTGCAAGTCCTAGTTCATTCACTGTTAAGAGAATCTTGCGCTTGGAAATTCCAGTAGATACTTACCCCAATTTCAATTTTGTTGGAAGACTTCTGGGGCCAAGAGGTAATTCTTTGAAACGGGTAGAAGCTACTACTGGTTGTCGTGTGTACATTAGAGGAAAAGGATCGATAAAGGACCCAGACAAGgaAGAGAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAACCACTGCACATTTTGATTGAGGCTGATTTACCTGCTAATGTTGTTGACATAAGGCTCAGGCAGGCTCAGGAAATTATTGAAGAATTGCTCAAGCCTGTGGATGAGTCACAGGACTATATCAAGAGGCAGCAGTTGCGTGAACTCGCAATGCTGAATTCAAATTTCAGAGAAGAGAGTCCCGGGCCAAGTGGTAGCGTGTCCCCATTCAACTCTAGTGGAATGAAACGGGCAAAGACGGGTCGCTGA 846 0.4634 MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQERLCGPPGMTMDWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0918 281 MobiDBLite consensus disorder prediction 255 281 - -
Ssu3g0918 281 CDD SF1_like-KH 136 256 - -
Ssu3g0918 281 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Ssu3g0918 281 SMART kh_6 131 231 IPR004087 GO:0003676
Ssu3g0918 281 MobiDBLite consensus disorder prediction 256 281 - -
Ssu3g0918 281 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Ssu3g0918 281 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g0918 281 Pfam KH domain 148 184 IPR004088 GO:0003723
Ssu3g0918 281 ProSiteProfiles Type-1 KH domain profile. 148 205 - -
Ssu3g0918 281 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 281 - -
Ssu3g0918 281 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
Ssu3g0918 281 PANTHER RNA-BINDING PROTEIN RELATED 2 281 IPR045071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0918 Ssu-Chr3 21956558 21962909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0918 K14945 - gmx:100816420 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0918 3 21956558 21962909 Ssu2g0930 2 46350763 46355312 PCT