Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0771 ATGTGGAAGCTCCTACGATTTGCCGCGTCCAGATCGCGGCGGTTCTCGACGGCCATTCCCGGTCCATGCAAGGTTCATAAGCGCGGCACTGATATCCTCCACGATCCTTGGTTCAACAAGGATACTGGGTTTCCTTTAACTGAAAGGGATCGATTGGGGCTTCGGGGCCTCCTTCCTCCTCGTGTCATTTCATTTGAGCATCAATATGATCGGTTTAtgAATTCATATAGATCTTTGGAGAAGAATACACAGGGCCAGTCAGATAAAGTTGTTTCTTTAGCCAAATGGAGGATCTTAAATAGACTGCATGACAGGAACGAGACTCTGTATTACAGAGTtcttattgataatattaaagaGTTTGCTCCAATAATATATACTCCTACAGTTGGGTTAGTGTGTCAAAATTATTCAGGGTTATTTAGACGCCCGCGCGGAATGTATTTTAGTGCTAAAGATAAAGGGGAGATGATGTCAATGATCTATAATTGGCCGGCTCATGAGGTAGACATGATTGTCCTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGAGTTCAGGGCATTGGAATACCCATTGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACCCACAAAGAATACTTCCAGTTATGTTAGATGTTGGCACAAACAATCAAAAGCTACTCGAAGATCCCCTTTATTTAGGAGTTCGACAGCCTAGGTTGGAAGGTGAAGAGTATATATCAATTGTGGATGAATTCATGGAAGCTGTTTATGCTCGTTGGCCTAAGGCTATTGTGCagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATatcgaaaaaggttttgcatGTTTAATGATGATATACAGGGCACAGCCGGTGTTGCACTTGCTGGACTATTGGGAACTGTAAGAGCCCAAGGTCGACTGTTGTCtgattttttgaaacaaaagatAGTTGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTTAACATGGCTGTCCAGGCTGTTTCAATGATGTCAGGGTCAGCTGgcaaaagtcaattttttttaattgataaaaatGGCCTTGTCACAACAGAAAGGAGCAATCTAGATCCAGCTGCAGTTCAATTTGCCAAAAGTCCAAGAGATCTTGAAGGGCTTACAGAGGGTGCTAGTATAGTTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTTCTTGGATTGTCTGGAGTTGGTGGTATTTTCAATGCAGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAATCCCACCATGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCTGGAGAAAATGTAGTGTTTGCAAGTGGAAGCCCATTTGAAAATGTAGATCTTGGAAATGGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTCCCAGGgattggtttgGGGACACTTCTATCAGGTGCTCATCATATAACGGATGGCATGTTGCAAGCAGCAGCTGAATGGTATATTTAA 1554 0.4138 MWKLLRFAASRSRRFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYDRFMNSYRSLEKNTQGQSDKVVSLAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRILPVMLDVGTNNQKLLEDPLYLGVRQPRLEGEEYISIVDEFMEAVYARWPKAIVQFEDFQMKWAFETLKRYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGRLLSDFLKQKIVVVGAGSAGLGVLNMAVQAVSMMSGSAGKSQFFLIDKNGLVTTERSNLDPAAVQFAKSPRDLEGLTEGASIVEVVKKVKPHVLLGLSGVGGIFNAEVLKAMRESVSTKPAIFAMSNPTMNAECTAIEAFSHAGENVVFASGSPFENVDLGNGEVGHVNQANNMYLFPGIGLGTLLSGAHHITDGMLQAAAEWYI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0771 517 PIRSF ME 6 516 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PANTHER MALIC ENZYME 8 514 - -
Ssu3g0771 517 Gene3D - 27 290 IPR037062 GO:0004471
Ssu3g0771 517 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 293 514 IPR036291 -
Ssu3g0771 517 SMART Malic_M_2 293 516 IPR012302 GO:0051287
Ssu3g0771 517 PRINTS Malic enzyme signature 109 133 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PRINTS Malic enzyme signature 264 282 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PRINTS Malic enzyme signature 323 339 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PRINTS Malic enzyme signature 429 445 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PRINTS Malic enzyme signature 289 305 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PRINTS Malic enzyme signature 205 227 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PRINTS Malic enzyme signature 169 198 IPR001891 GO:0004470|GO:0004471
Ssu3g0771 517 PANTHER MALIC ENZYME-RELATED 8 514 - -
Ssu3g0771 517 SMART malic_2 103 283 IPR012301 GO:0004471
Ssu3g0771 517 Gene3D - 291 516 - -
Ssu3g0771 517 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 14 292 IPR046346 -
Ssu3g0771 517 Pfam Malic enzyme, N-terminal domain 103 283 IPR012301 GO:0004471
Ssu3g0771 517 Pfam Malic enzyme, NAD binding domain 293 514 IPR012302 GO:0051287
Ssu3g0771 517 ProSitePatterns Malic enzymes signature. 289 305 IPR015884 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0771 Ssu-Chr3 18376968 18382061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0771 K00028 - gmx:100795823 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0771 3 18376968 18382061 Ssu3g0771 3 18376968 18382061 ECH
Ssu3g0771 3 18376968 18382061 Ssu4g2742 4 70134452 70142355 PCT