Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0243 ATGCCTTCTGAGACAATTGACTTCAAGAGTTTCTCTTCATCGTTGTATTCCTCTGAAGATATTTGTTCTTCTAATGAGAGGCAGGCTAGCTTTTGGAAATCAGATAACCTGCCCAAATGCTATGATTTTGATCAAGGAATAAAAACCAGCATGAACGTACAAGCATTATCCAATTTATCAGATAGTGGCAAAGTTAATATAGTTGCCACTCAGCATGAAAGTAGCCTCTTCTCAAGTTCTCTGTCAGAGTTGTTTAGCAGGAAATTGAGATTATCAgcaaataatgttttatatggaCATTCAGTTGACACTGTTGCATCCCACTATGAGGAAGAGAGACTTTTTGACTCTCTTGAAGAACTTGAGGCTCAAATTATTGGAAATCTACTCCCCAGTGATGATGATTTGCTTTCTGGAATGACTAATGGGCATGACCACATCATCCAAGACAGCGCCGGTGATGACACGGATGAACTAGACCTTTTCAGTAGCGTTGGAGGGATGGATTTAGGAGATGATAATAGTTCATCTCCTGGGCAAAAGAATTCTGAAATCCTTGATGGAGCTTGTAACAGTCAACTAGGGATGTGTGGTGCCACAATTGCTGGAGAACAACCTTACAATGAACACCCTTCTAGAAAAATAGTTGCGAGAAATATTGATAGTAATGTTGAAGATTCTGAATTGAAAGCTCTTTTTGAGGCTAGTCTTTCCATGAAAGATATCAATCAGGGCACTCTCATGGTCTTTTTATACGATTCATCTGTTTCAACTAATGAACTTTACcacatatttaatgtttatggAGAAATCAAGGAGATTCATGAAAATCCACAAGGTCGACATCACAAATTGATCGAATATTATGATGTTAGAGCTGCAGAGGCAGCTCTCCATGCTGTAAATAGAGATGATACTACCAGGAAGAGACTAAGGGTTGAGCCAAGCCAATCTGAAAACTCAATACAGTGTATGGCTCAACAGATCCATCCAGAATTGGAACAGAAAGAAAGTAGCCTTTATCTGCATCAGAACAGCCCTCCTCTTAAATCACCAACTAGCTTCCCAGGTTTGCATGGGATTTCTAAAACTGGTAGTATGGATGGTGGAAGAATTCTTGATGTTGAACCTGCTACATGCACGCCATCCCCGGAAATTGCCTTTGTTCATGGGGTCTCTTCAAGTGTTCCTAACTCCTTGCCATCACTAGTCAGAGTTAAATCAGTTGACAACAGATGTGAAATTATTGAATCTGGTTCGCCAGGCCAGttgaattttgatattcaaGCTGCATCAGCTTTTCATCCCCATTCCCTTCCAGAATGTCATGACAGTTTAGCTACCAGTGTTCACCGTGTTCCTCCTGAGGTGGCAGCAAACATCAATCTCAAAACACAGGAAAGAATAGATAACATGCAGTTCTGTCAAGTAAACTCCAATGGACGCTTCATGGAATTCAATGAATGTGTTTTTAAATCCTCTGGTAATGGAAGTTGCTCTCTTCCTGGACATCATTACAAATGGGGCAACTCCTATCAGCCTCCTAGAATGATGTGGCCAAATTCACCTTCATATTTTGATGGAGTTTGTGCAGCTTCTACCCTGCCAAGATTGCATGGACTTCCTAGGTCACCATCACATGTGATGACCACAGTTTTACCCATAAATGGCCAGCATGTGGCTTCAGCTCCTCTTGGGAATATGCAATTTTCCGGTAATACAGCACCACACTGTGTTGACTTTGTTTCTTATAATATCTTTCCCCATTTTGGGGGAAACTGTGTTGACCTTAGAATCCTCCCCAAGAATCTTGGACTCCATTTTCGTAACCAAAGGGACCTAATGTTTCCTAGAAGAAACCATATGGTTAATTCATTTGAGACTCACCAACACCGTGCTAGAAGCCGCAGAAATGAAGGTGTGTCAAACTTGGCTGACAAGAAACAGTATGAACTGGATATTGACCGCATAAAGAAGGGTGAAGATAACCGAACGACACTTATGATAAAGAACATTCCTAACAAGTATACATCCAAGATGCTGTTGGCTGCGGTTGATGAACGCCATAGAGGAACTTATGATTTTGTTTATCTACCAATTGATTTCAGGAACAAATGCAATGTGGGATATGCATTCATCAACATGACTAATCCTGACTTGATTATACCATTCTATCAGGTGTTCAATGGAAAGAAATGGGAGAAATTCAACAGTGAGAAAGTGGCATCACTAGCATATGCTCGCATACAAGGGAAAGCAGCACTTATTGCTCACTTTCAAAATTCAAGCTTGATGAATGAGGACAAGCGCTGCAGGCCTATCCTCTTCAATACTGATGGCCCTAATGCTGGTGATCAGGTTCCTTTCCCAGTGGGCATTAATATTCGCAATAAAGCTGGAAGAGTGAGAAACAACACACAGGAGGATAACCTGCAAGGGGGTCAGCCTAATTTGGGAAACAGTAAGCTCTCATCTGATGGAGGCAGTCATTCACTGGAGTCAGACTAA 2508 0.4055 MPSETIDFKSFSSSLYSSEDICSSNERQASFWKSDNLPKCYDFDQGIKTSMNVQALSNLSDSGKVNIVATQHESSLFSSSLSELFSRKLRLSANNVLYGHSVDTVASHYEEERLFDSLEELEAQIIGNLLPSDDDLLSGMTNGHDHIIQDSAGDDTDELDLFSSVGGMDLGDDNSSSPGQKNSEILDGACNSQLGMCGATIAGEQPYNEHPSRKIVARNIDSNVEDSELKALFEASLSMKDINQGTLMVFLYDSSVSTNELYHIFNVYGEIKEIHENPQGRHHKLIEYYDVRAAEAALHAVNRDDTTRKRLRVEPSQSENSIQCMAQQIHPELEQKESSLYLHQNSPPLKSPTSFPGLHGISKTGSMDGGRILDVEPATCTPSPEIAFVHGVSSSVPNSLPSLVRVKSVDNRCEIIESGSPGQLNFDIQAASAFHPHSLPECHDSLATSVHRVPPEVAANINLKTQERIDNMQFCQVNSNGRFMEFNECVFKSSGNGSCSLPGHHYKWGNSYQPPRMMWPNSPSYFDGVCAASTLPRLHGLPRSPSHVMTTVLPINGQHVASAPLGNMQFSGNTAPHCVDFVSYNIFPHFGGNCVDLRILPKNLGLHFRNQRDLMFPRRNHMVNSFETHQHRARSRRNEGVSNLADKKQYELDIDRIKKGEDNRTTLMIKNIPNKYTSKMLLAAVDERHRGTYDFVYLPIDFRNKCNVGYAFINMTNPDLIIPFYQVFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPVGINIRNKAGRVRNNTQEDNLQGGQPNLGNSKLSSDGGSHSLESD 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0243 835 PANTHER PROTEIN MEI2-LIKE 4 43 234 - -
Ssu3g0243 835 MobiDBLite consensus disorder prediction 806 835 - -
Ssu3g0243 835 Gene3D - 242 340 IPR012677 -
Ssu3g0243 835 PANTHER PROTEIN MEI2-LIKE 4 238 827 - -
Ssu3g0243 835 SUPERFAMILY RNA-binding domain, RBD 246 320 IPR035979 GO:0003676
Ssu3g0243 835 Pfam RNA recognition motif 2 664 760 IPR007201 -
Ssu3g0243 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 318 IPR000504 GO:0003723
Ssu3g0243 835 CDD RRM3_MEI2_like 667 752 IPR034454 -
Ssu3g0243 835 PANTHER RNA RECOGNITION MOTIF-CONTAINING 43 234 - -
Ssu3g0243 835 PANTHER RNA RECOGNITION MOTIF-CONTAINING 238 827 - -
Ssu3g0243 835 SUPERFAMILY RNA-binding domain, RBD 666 751 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0243 Ssu-Chr3 4345308 4351770 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0243 - - var:108327001 1309.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0243 3 4345308 4351770 Ssu3g0243 3 4345308 4351770 ECH