Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0236 ATGGCGGAAGAAGAGCCCGAAATCCATCCACCGCCGGCGGACCCTCCAATCCCCTCCGCGCCGGACGCCGCAGCAGAAACCGCGGCGCCGGCTCAGGCAACTACGTCGCAGCCAAGCGCCGAGATCGCCGCCCCTCCTGCGCTAGCTCCGAAGCGGCAACGCCGTCCGAGCGTCCGTTTAGGGGAGATCGGCGACCAACGCGCCGCCGCACACGGCCACGACTCGCACACGCGCCGCCCGAGCATGCCGCCGTGGAGCTGGCGGACTCCGAAGGAATCTTCCAGAACCTCGAAGGCGCGCTCCGTGGCGAACCTCAACGGCGGCGAGGAGTTCGGAAACAGCAACCGAAGGGGAAAAGCGAAACGAGGACCAACGACGAAGCGGTTGAGGTCGAACTGGGCTCCGAGAGCAACGATCGACGAGAACGGTGACGAAGAAGGGTTTAGGGATTTCGAACACGAACACGAACACGAACACGAGCACGAGCACGATCAGAGCCCGGTGCACTCGGTGGAAGAGAACGGCGTGGACTATTGGCACGTGGATCGGAACGAGGATCCTAGGGTTAGGGTTTCGGAAAACGACGGCGTTGAATCGGAATCGCGGGAGCGGAGGAAGAGCGAGGGAGTGAGGTCTTGGCTTTTCGAGTTAGGGCTGAGTCGGTATGCGCCTATGTTCGAGATCCACGAGGTCGATGACGAGTTGCTTCCCATGTTGACGTTGGAGGATCTCAAGGATATGGGGATCAATGCTGTTGGTTCCAGAAGGAAAATGTACACTGCGATCCAGAAGCTTCGGAAATGCTTGCCGTGA 813 0.6089 MAEEEPEIHPPPADPPIPSAPDAAAETAAPAQATTSQPSAEIAAPPALAPKRQRRPSVRLGEIGDQRAAAHGHDSHTRRPSMPPWSWRTPKESSRTSKARSVANLNGGEEFGNSNRRGKAKRGPTTKRLRSNWAPRATIDENGDEEGFRDFEHEHEHEHEHEHDQSPVHSVEENGVDYWHVDRNEDPRVRVSENDGVESESRERRKSEGVRSWLFELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKLRKCLP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0236 270 MobiDBLite consensus disorder prediction 87 111 - -
Ssu3g0236 270 MobiDBLite consensus disorder prediction 55 78 - -
Ssu3g0236 270 Pfam SAM domain (Sterile alpha motif) 207 266 IPR001660 GO:0005515
Ssu3g0236 270 SMART SAM_4 202 268 IPR001660 GO:0005515
Ssu3g0236 270 SUPERFAMILY SAM/Pointed domain 207 267 IPR013761 -
Ssu3g0236 270 ProSiteProfiles SAM domain profile. 205 268 IPR001660 GO:0005515
Ssu3g0236 270 PANTHER PROTEIN BICAUDAL C HOMOLOG 1-A-LIKE 4 269 - -
Ssu3g0236 270 MobiDBLite consensus disorder prediction 1 203 - -
Ssu3g0236 270 PANTHER SCP160 4 269 - -
Ssu3g0236 270 MobiDBLite consensus disorder prediction 139 203 - -
Ssu3g0236 270 CDD SAM_superfamily 210 264 - -
Ssu3g0236 270 Gene3D - 204 265 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0236 Ssu-Chr3 4207380 4208192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0236 - - gmx:102664652 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0236 3 4207380 4208192 Ssu3g0236 3 4207380 4208192 ECH