Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0214 ATGGATTATTCTTCTTCGATCTCTCACTTCCGAGCTTCCGCAAATTTGTTTCTCTCCCAATACGAACCCCTCGCCCTGCTTCTCGCTCCTCCCCTCTCTCTTCTTATCGCCCACGCTCTTCGCTCCTTCTTCCACCTCCTCATCCATAACGGACTCAAAGCCACGCTCCTAGGGTTTCTCATTAACTCTGTCAAATTGGTCCCTGGCGTGAAGAGATACATAGATGCCGAAAAACGGAAGGTTGTGGATAAGTTGCAATCTGATAGTAAATCTAAAAGAGAAGGTTGGAAAACTGAGTTGCCAAGCACAGGATTAGGGACATCTGTCCttgagaaaatgaaagaggaGAAAATAAATGATGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTGTTCCAGAGCGTTGGACACTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTTCTTGGAAGTAAGGAAAAGAGTTCTGGGGGACAAATATGTGGCAACATGACATCAGGAGGGACTGAAAGTATATTATTGGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATAATTCCTGACTCTGGACACTCAGCATATGACAAGGCTgcacaatattttaatatcaaactaTGGCGTGTACCAGTTAACAAGAATTTTCAAGCTGATGTGAAAGCGATTCGACgtcatattaacaaaaataccaTCTTGATTGTTGGATCTGCTCCTGGGTTTCCCCATGGAATAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTGTTACCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTGGATGTACATAAATACGGTTTAGCTCCCAAAGGAACAAGTGTAGTTCTTTATAGGAACCATCAAATCAGAAAGCTGATTActaatgtattttctttctgTCTTCTGGACTCTACAGCATCAATTTGTTGCTGCATTGAGGAGATTGCTGAGTTGTTTATTGTTGGAAGACCCGACATGACGATTGTGGCTTTTGGATCTGATGTTCTGGATATATTTGAAGTCAATGATGTTATGTCATCTAAAGGTTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATCTGTGTGACACTGCAACATGGGCCAATTGTTGAAGACTTTGTCAAGGATTTAAAGGAATCTGTGAAAACTGTGAAAGAAAATCCAGGTCCAGTAAGTGGAGGCCTAGCACCCATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACGGGACCTGCTAA 1497 0.4108 MDYSSSISHFRASANLFLSQYEPLALLLAPPLSLLIAHALRSFFHLLIHNGLKATLLGFLINSVKLVPGVKRYIDAEKRKVVDKLQSDSKSKREGWKTELPSTGLGTSVLEKMKEEKINDAVWQGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFQSVGHFEAEVVAMTAALLGSKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPDSGHSAYDKAAQYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHQIRKLITNVFSFCLLDSTASICCCIEEIAELFIVGRPDMTIVAFGSDVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHGPIVEDFVKDLKESVKTVKENPGPVSGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0214 498 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 18 365 - -
Ssu3g0214 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 168 361 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ssu3g0214 498 Gene3D Aspartate Aminotransferase, domain 1 376 452 IPR015422 GO:0003824
Ssu3g0214 498 PANTHER - 18 365 - -
Ssu3g0214 498 Gene3D - 139 375 IPR015421 GO:0003824
Ssu3g0214 498 Gene3D - 453 497 - -
Ssu3g0214 498 PANTHER - 376 498 - -
Ssu3g0214 498 SUPERFAMILY PLP-dependent transferases 74 461 IPR015424 -
Ssu3g0214 498 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 376 498 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0214 154 357 Calmodulin-binding Proteins AT3G17760 25.909 4.70e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0214 K01634 - gmx:100794395 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0214 3 3805672 3812310 Ssu3g0214 3 3805672 3812310 ECH