Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0203 ATGAGTCAAGAGAAGATAATGCATTACCAAGTGGAGGCAGCTGCTGCGTGGAGCTACTACATGCGGGTTCGGAGCATGGATGAGGACCAGATGGAGAGAGTGGCGAGGCTGGCCTCTCAGAGTGCTGTGGTGATATTCAGTGTGAGCAGCTGCTGCATGTGCCATGCAATGAAGAGGCTCTTCTGTGGCATGGGCGTCAACCCTGCGGTGCACGAGCTGGACCAAGACCCCAGAGGGAAAGACATGGAGAGAGCACTCATGAGGCTCCTTGGAAATGGACTCAACTCCACTGCTGCGGTTCCTGTGGTCTTCATTGGAGGGAAGCTTGTTGGGTCCATGGACAGGGTTTTGGCTTTCCACATCGGTGGCACCCTTGTCCCACTTCTCAAACAAGCTGGAGCTTTGTGGCTTTGA 414 0.5459 MSQEKIMHYQVEAAAAWSYYMRVRSMDEDQMERVARLASQSAVVIFSVSSCCMCHAMKRLFCGMGVNPAVHELDQDPRGKDMERALMRLLGNGLNSTAAVPVVFIGGKLVGSMDRVLAFHIGGTLVPLLKQAGALWL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0203 137 PANTHER GLUTAREDOXIN 7 136 IPR011905 -
Ssu3g0203 137 ProSiteProfiles Glutaredoxin domain profile. 31 136 - -
Ssu3g0203 137 Gene3D Glutaredoxin 21 136 - -
Ssu3g0203 137 CDD GRX_GRXh_1_2_like 42 128 - -
Ssu3g0203 137 Pfam Glutaredoxin 43 110 IPR002109 -
Ssu3g0203 137 SUPERFAMILY Thioredoxin-like 31 136 IPR036249 -
Ssu3g0203 137 TIGRFAM GlrX-like_plant: glutaredoxin-like family 34 137 IPR011905 -
Ssu3g0203 137 PANTHER GLUTAREDOXIN-C1 PROTEIN 7 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0203 Ssu-Chr3 3671730 3672143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0203 7 137 Miscellaneous Gene Families AT3G02000 57.857 3.08e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0203 K03676 - gmx:100797942 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0203 3 3671730 3672143 Ssu3g0203 3 3671730 3672143 ECH