Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0002 ATGACAGCTCCAGATATGGAGGCGATCACTGCTTCCTTAGAGAGGTCTCTTCAAAACTGTTccttaaataacaacaacaacaaccaccaccaccaccaccagagCAGGAGGGAAGACGGCTCAGCCACAGATGCAGGCGTAGGAATCTCATCCAGCTCAGACGATGTCCCGAACCCGGATAATAATCATATCTCCAACTCCGACACCACTTTAGAGCTCAACTCCCACATCTCACTCCCTTATCATTGGGAACAATGCCTAGATTTAAAGACGGGggaaatttattacattaactGGAGGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGGGCGGCAGAGTATAGTGTAAGTAGGGATTATGAGTCTGAAGAAGAAAGCTGGTACGACAGCGAAGAGTCTTCATCGGAGTCATGCCCTTCTTCATCTAAAGAGCACTATCAGGGACAGGTAGAGAAACAGAATGTTCTGGTGGTGGCTGGGTGCAAGGGCTGTCTCATGTATTTCATGGTGCCCAAACATGTTGAAGATTGCCCAAAATGTAGTGGTCAACTTCTCCACTTTGATCGATCCGAAAATGGCTCTCCATGA 591 0.4298 MTAPDMEAITASLERSLQNCSLNNNNNNHHHHHQSRREDGSATDAGVGISSSSDDVPNPDNNHISNSDTTLELNSHISLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRRAAEYSVSRDYESEEESWYDSEESSSESCPSSSKEHYQGQVEKQNVLVVAGCKGCLMYFMVPKHVEDCPKCSGQLLHFDRSENGSP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0002 196 MobiDBLite consensus disorder prediction 133 147 - -
Ssu3g0002 196 Gene3D - 77 114 - -
Ssu3g0002 196 SUPERFAMILY WW domain 75 111 IPR036020 GO:0005515
Ssu3g0002 196 MobiDBLite consensus disorder prediction 107 147 - -
Ssu3g0002 196 PANTHER BNAA04G19570D PROTEIN 42 194 - -
Ssu3g0002 196 PANTHER BOMB/KIRA PROTEINS 42 194 - -
Ssu3g0002 196 MobiDBLite consensus disorder prediction 107 124 - -
Ssu3g0002 196 MobiDBLite consensus disorder prediction 19 67 - -
Ssu3g0002 196 MobiDBLite consensus disorder prediction 45 67 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0002 - - pvu:PHAVU_008G000400g 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0002 3 82204 83403 Ssu3g0002 3 82204 83403 ECH