Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3182 ATGTCGATAACGGGCATCCAGGGGCAACCTCTTGAGGTCACGGTGGTGTCGTGTTCCAAGTTGAAGGACACAGAATGGATTTCAAGGCAAGATCCGTACGTTTGTGTTGAATATGGGAGCACTAAGTTTCGAACCCGAACCTGCACAGACGGTGGAAAAAATCCCGTATTTCAAGAGAAGTTCATCTTTCCCCTCATTGAAGGCCTTCGGGAGATCAATGTCTTTGTTTGGAACAGCAATACTCTCACCTTCGATGATTTTATCGGCAGCGGGAAGATTCAATTGCACAAGGTTCTTTCTCAAGGTTTCGATGACTCTGCTTGGCCACTTCAAACCAAAACTGGCAGATACGCTGGTGAAGTAAAAGTCATATTGCATTATGCAATTGCAAATCAAAGGCAGAAATCAGGCTCAAGCCATGCTCCATCGGCACCTCCGTACGTGCCAACATATTCTACGCCGCCTGCTACTTCCTACCCACCACCGCCTTCTGCTACTTCCTatcctccaccaccaccaccacctccttcTGCCACTTCCTACCCCTCTGCAACTCCATACCTTCCAACTGGATCTTACCCACCGCCTCCCACAGCTTACCCTTCTATCCTTCACATTCATCTCCCTATCCACCATCCTCATACCCTGCATCATCTCCCTATCCTTCACATTCATCATCATATCCTCCTCCCCCTTCATATCCACCTGCTTCACCTTATCCACCACCTCCATATCCACCACCTGCAGGTTATCCTCctggtaattattattattattatttttctaattcatttCTACTACTTGCCGCTGCTTGTCTGCTCTTCTTTGAGAAccctttttttgttattgtgctTTTCTCCGTCCTAA 867 0.4348 MSITGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPVFQEKFIFPLIEGLREINVFVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSAWPLQTKTGRYAGEVKVILHYAIANQRQKSGSSHAPSAPPYVPTYSTPPATSYPPPPSATSYPPPPPPPPSATSYPSATPYLPTGSYPPPPTAYPSILHIHLPIHHPHTLHHLPILHIHHHILLPLHIHLLHLIHHLHIHHLQVILLVIIIIIIFLIHFYYLPLLVCSSLRTLFLLLCFSPS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3182 288 Gene3D C2 domain 9 128 IPR035892 -
Ssu2g3182 288 CDD C2 11 108 - -
Ssu2g3182 288 MobiDBLite consensus disorder prediction 134 181 - -
Ssu2g3182 288 Pfam C2 domain 11 101 IPR000008 -
Ssu2g3182 288 MobiDBLite consensus disorder prediction 147 181 - -
Ssu2g3182 288 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Ssu2g3182 288 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 4 202 - -
Ssu2g3182 288 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 127 IPR035892 -
Ssu2g3182 288 SMART C2_3c 10 107 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3182 Ssu-Chr2 94143300 94144690 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3182 - - gmx:100776879 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3182 2 94143300 94144690 Ssu2g3182 2 94143300 94144690 ECH