Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3179 ATGTTGGGAGCGTTGAGGAGTCGTCAGTGTCACTTCTGGGCGACAAGGCCGTGGGGCAAATGGCTTACTCTGCCTCCCGTCAGTGCCACTGCGACTCTGGAGGGGGAGGGGAATGGGAATGGGAATGAACTCTCCTCCAACCCCACCACTGCGCTCAAATGGGTTCTTCGCTGCTGCCCCCACCTGCCCAGACCGCTTGTGCACAAGCTTTTCCGTCTAAGACAGGTTCGAATTGCCTCTCCTGCCAATGACATACAACATCAAACATTCAAAAGGGTGACGGCTAAGGACACCTTGAACACAGGAGATCGGATCTTACTTCCTCAATctgttaaagaaaaagaaacgcCTACACACAAACATCACTCTCACCTCACTCCCGACGAAACTAACTTTATCCGTAGTCTTGTTATCTATAAGGATCCTGCCGCTCTCGTCCTCAACAAACCTCCAGGAATGCCAGTGCAGGGTGGCATTAATATCAAATGGAGTTTAGATGTAGTTGCTGCTGCatgtttaaattatgaatactcTGAACCCCCTCGTCTGGTGCATAGACTAGACAGAGACTGTTCTGGCATTCTGGTTATGGGAAGGACACAAACAAGTACTACAGTCCTGCATTCCATCTTCCGGGAGAAAACTTCCAGGGCTTTAGATGATGTGACTATTGACAAAGAAAAGAGAATCCTACAGAGAAGGTACTGGGCACTGGTCCTTGGATGTCCTAGACGTCCAAAGGGGTTAGTCATGGCTTCACTGGGTAAGGTGGTGGTTGACAATGGGAGATCTGATCGAATAACTATTGTTGACAATTCTACATTAATGTCATCACAGCATGCAATTACAGAGTACCGAGTGATTGcatcatcatcacatgGTTACACGTGGTTGGAGCTGTCTCCTTTAACTGGTAGAAAACACCAGCTTCGAGTCCACTGTGCTGAGGTGTTAGGTACACCAATAGTTGGGGACTACAAGTATGGATGGCAAGCTCACAGGAAGTGGGGACATTTTGATTTGTCTAATGTGGAGGACTCACGTGAAGAGCTTCTCAAGGAAGAAACACTCCCCTTTGGCCTTAATTTGACCAAAGGAAGCATCTCTGAGAATCATCCTCGTTTACATCTTCATTGCAAGCAAATAGTCTTGCCTAATATATCTCAAGCACTGCAAAATGTGCAATCAGCTTCCAATTGTGATCTTTCACTAGTGGAAGGACTTGAATTGGTCGCGGATTTGCCTCCATACATGCAAAGAAGTTGGGATGTCacaaattattaa 1284 0.4502 MLGALRSRQCHFWATRPWGKWLTLPPVSATATLEGEGNGNGNELSSNPTTALKWVLRCCPHLPRPLVHKLFRLRQVRIASPANDIQHQTFKRVTAKDTLNTGDRILLPQSVKEKETPTHKHHSHLTPDETNFIRSLVIYKDPAALVLNKPPGMPVQGGINIKWSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSRALDDVTIDKEKRILQRRYWALVLGCPRRPKGLVMASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLSNVEDSREELLKEETLPFGLNLTKGSISENHPRLHLHCKQIVLPNISQALQNVQSASNCDLSLVEGLELVADLPPYMQRSWDVTNY 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3179 427 SUPERFAMILY Pseudouridine synthase 133 386 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu2g3179 427 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 22 425 - -
Ssu2g3179 427 CDD PseudoU_synth_RluA_like 145 337 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu2g3179 427 Gene3D Pseudouridine synthase 128 397 - -
Ssu2g3179 427 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 22 425 - -
Ssu2g3179 427 Pfam RNA pseudouridylate synthase 145 315 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3179 Ssu-Chr2 94097200 94101538 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3179 - - gmx:100779473 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3179 2 94097200 94101538 Ssu2g3179 2 94097200 94101538 ECH