Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3174 ATGAGTTTAGACTCGTCTCGCTCAGGTAGCTCCTCAGCTCCCAATTCTAAACGAAGTTTCTCTAATTCTGTATCTTCCATCCGCTCCAACGATAACAGtaacaagaacaagaaaaagaagaagacaacCACCAACCAGAAAACCCTAGGCGTTGCTTGGGGCTCAAATTCTCTCTCCTCCTTTCGAAATTCCGCCTTCTCCGATTTCAGcagTTATATGACAGAGAAGAATCGGAAACTACGCAAACAGTTTGACGCTGAGGCTTCCACGTCATCGTTTAGTGGCTCTAGTTCTGGGAAGCCTATATTCACTGGAGTTTCAATTTTTGTTGATGGTTTCACGGTTCCTTCCAGCCAGGAACTGCGGAGCTACATGCTAAAGTATGGTGGAAGATTTGAGAATTATTTCTCAAGACACCGTGTAACACATATCATCTGCAGTAATCTGCCTGATAGTAAAGTCAAGAACCTCAGAGCCTTCAGTGCAGGGTTGCCAGTGGTGAAACCCACTTGGATTTTAGATTCTGTTGCTGCTAATAGACTCTTGAGCTGGGTGCCTTATCAACTTGACCAGCTTGCTAATAACCAACCAAAACTGTCAGCCTTCTTCACATTGAAAAGTAGTAAAATGTCAGAGGATGCTTTTACAAATGCCCTTTGTCAAGTAGTGTTAGATGTTGAAGATTCATCTATGAGGGTTGGCCAATCAGATTCAGAGGATAGACACTCATCCAAAGTTGGGGAGATGATTGAACTTAGCAGGCAAATCAGTACTGAATCTGAGGATATTGTCCCTGAGAATACTAGTGCAATTATGATGGAAGAATTGACTAGTGTTAGAGTTAAATGTGATGAAGAAGAGCATGCAGGTGGAAGCAATGCTGCTACTAACGATGAGAGAAATGTCAAAGGTGAACTTGAATCCACTCATCAAGCACCTTCTACATCATTTAGTACTCCCTGCTCAGATGAGCAGAATGTAAAAGAATTTCCAAATTCTTCAGCCACTAGGCCTTCTATACAGTGTCATTCAACTCTTGCAGACCCCAATTTTGTGGAAAATTATTTCAAGAGCTCACGACTACACTTTATAGGAACCTGGCGAAATCGGTATCGAAAGCGTTTTTCCATCTTGTCTACTGGGTTTAACAatgaaaattctaatattaGTGCCTCTGATATTTCTCGTAATTCAGTCATTATCCATGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATCAGGAAGCACCCTGAATTGTTGGACCAGCCTGTAGCTGTATGtcattcaaataattcaaatggAACTGCTGAGATTTCCTCTGCAAACTACCCAGCTCGTAGTCATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCTCTTTGTCCCTGCCTCGTTATCTTTCCATACAACTTTGAAGCTTACGAGGAAGTAGCTGATCAATTTTATAGTATATTGCATCAGCGTTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTCACAGATTCAGAGGTTGAAGATCCTGAACTTTTAGCTTCATCAATTAGAGAAGAGATCTATAAGACCACTGGATGTACAGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGTATTGCTACTAGAACTGCAAAACCGAATGGTCAATATCACATTACTACAGAAAAGGTTGAGGATCATTTATGTCAACTCCCAATTAGTGCACTTCCTGGAATAGGCTATGTTTTACAGGAGAAGTTGAAGAAACAGAATGTTTACACATGTGGACAATTGTGCATGATTTCCAAGGCCTCACTGCAGAAGGACTATGGTATGAAAACAGGAGAAATGCTGTGGAATTATAGTAGAGGAATTGATAACCGGTTAGTTGGGGGCTTTCAGGAAAGTAAGTCTGTTGGTGCTGATGTAAATTGGGGTGTGAGATTCAAAGATATAAAAGATTGTGAACACTTCCTAATAAACCTTTGCAAGGAGGTCTCGTTACGATTGCAGTGTTGTGGAGTGCAGGGGCGCACTTTCACTCTTAAGatcaaaaagagaagaaaagatgCTGATGAACCCGCAAAGTTTATGGGCTGTGGGGACTGTGAAAATTTGAGTCACTCGGTAACGATTCCACTTGCTACTGATAATCTGGAAATACTGCAAAGAATAGTAAAGCAgctgtttggatgtttttacaTAGATGTCAAGGAGATTCGAGGTATTGGCTTGCAAGTTTCCAGACTTGAAAGTGCAGAGGCTTCTAAACAAGGTACAgcaaaatatactttaaaatcatGGCTCACTTCTGGACATGCAAGCATAGAAAATCAGAAATATCCTATGGGTCATGAGAAGCAGAACATGGATAGCACTTCCAGTCGTGCATGTAGAGATTTGCAAGGGTCTTCAGTTCAAATGGACAATAAAATTCCAAATAACCAAGCTAGTACTGACCCAATTTCAACACCTCCTCCTTTATTTAACCTTGACGTGGAAGTTATAAGGAATCTTCCCCCGGAAgtattttcagaattaaatgaaatttacgGAGGGaagttaattgattatattgctAACAGTAAAAGCACATGTGAGAGTTCTAGCCCTTCAGGAAACTCATTTTTGGAGCAAGAAGTTTTGGTGGCAGCAATAAACAAGGAAGAGGAACTTTCCTATTCTGAGTCGATGCCTCAAAACAAtctattatcaaaaaataagGCAAAGCAGTATAAGGTGGACACAAGTGAAGGTGAAGCAGTACCATATTCAGGGTGTAGACCCTATTTCAAGGTTACTCACCAttcaagttttgaaaaagaTGATTTATTGCCTTCTTCTTTAAGTCAAGTTGATGGTTCAGTGTTTCAACAATTGCCTGAGGATTTGAAAGCTGTCATCGTTGAGCAGCTTCCTACACACAGGAGGCCAGAGATTTGCTCCAATGTTGTTGTGGTCCCTCCTCTTGAAAACCATTCGGTGTCAGTAGGTGTTGAAATTTCTGAGAATTTTCCTGGATCAAGTTATCATGGCAGTCTATGGGCCGGGAATCCTCCAAATTGGGTTGGGAAGTTTAAAGATAGCAGTTGCTTAATATTAAAGAAGCTTGCAGAATTGTATTACAAGTCAGGGTTGACTAGCACGTTATCTTCAGTTTTGCACCAAATTATATCTGAATTCTATGAGCTAAATCTGGCCCAGCAGTTTTCTGATGAAACTGTTAACATTATGTGTGAGCTACTGAGGCAGTATATCAAAGTGAAGATAGAAAGAGATATTGAAgagatttatatttgttttcgGCTTCTGAAAAGGTGTGCAGCTAAGTCCCAATTTTTCCTACAAGTGTATAATAGTGTATGTCCTTACCTTCAGGCAGCTGTTGATGACAATTATGGAGGGACTTTGTTTTTATCATCATAG 3429 0.3864 MSLDSSRSGSSSAPNSKRSFSNSVSSIRSNDNSNKNKKKKKTTTNQKTLGVAWGSNSLSSFRNSAFSDFSSYMTEKNRKLRKQFDAEASTSSFSGSSSGKPIFTGVSIFVDGFTVPSSQELRSYMLKYGGRFENYFSRHRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQLANNQPKLSAFFTLKSSKMSEDAFTNALCQVVLDVEDSSMRVGQSDSEDRHSSKVGEMIELSRQISTESEDIVPENTSAIMMEELTSVRVKCDEEEHAGGSNAATNDERNVKGELESTHQAPSTSFSTPCSDEQNVKEFPNSSATRPSIQCHSTLADPNFVENYFKSSRLHFIGTWRNRYRKRFSILSTGFNNENSNISASDISRNSVIIHVDMDCFFVSVVIRKHPELLDQPVAVCHSNNSNGTAEISSANYPARSHGIRAGMFVRDAKALCPCLVIFPYNFEAYEEVADQFYSILHQRCNKVQAVSCDEAFLDVTDSEVEDPELLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHLCQLPISALPGIGYVLQEKLKKQNVYTCGQLCMISKASLQKDYGMKTGEMLWNYSRGIDNRLVGGFQESKSVGADVNWGVRFKDIKDCEHFLINLCKEVSLRLQCCGVQGRTFTLKIKKRRKDADEPAKFMGCGDCENLSHSVTIPLATDNLEILQRIVKQLFGCFYIDVKEIRGIGLQVSRLESAEASKQGTAKYTLKSWLTSGHASIENQKYPMGHEKQNMDSTSSRACRDLQGSSVQMDNKIPNNQASTDPISTPPPLFNLDVEVIRNLPPEVFSELNEIYGGKLIDYIANSKSTCESSSPSGNSFLEQEVLVAAINKEEELSYSESMPQNNLLSKNKAKQYKVDTSEGEAVPYSGCRPYFKVTHHSSFEKDDLLPSSLSQVDGSVFQQLPEDLKAVIVEQLPTHRRPEICSNVVVVPPLENHSVSVGVEISENFPGSSYHGSLWAGNPPNWVGKFKDSSCLILKKLAELYYKSGLTSTLSSVLHQIISEFYELNLAQQFSDETVNIMCELLRQYIKVKIERDIEEIYICFRLLKRCAAKSQFFLQVYNSVCPYLQAAVDDNYGGTLFLSS 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3174 1142 Gene3D - 417 471 - -
Ssu2g3174 1142 Gene3D - 349 380 - -
Ssu2g3174 1142 ProSiteProfiles BRCT domain profile. 98 189 IPR001357 -
Ssu2g3174 1142 MobiDBLite consensus disorder prediction 1 48 - -
Ssu2g3174 1142 Gene3D - 636 760 IPR036775 GO:0003684|GO:0006281
Ssu2g3174 1142 SUPERFAMILY DNA/RNA polymerases 395 631 IPR043502 -
Ssu2g3174 1142 PANTHER DNA REPAIR PROTEIN REV1 40 1137 - -
Ssu2g3174 1142 MobiDBLite consensus disorder prediction 1 31 - -
Ssu2g3174 1142 Gene3D - 400 561 IPR043128 -
Ssu2g3174 1142 Gene3D BRCT domain 93 189 IPR036420 -
Ssu2g3174 1142 SUPERFAMILY BRCT domain 69 191 IPR036420 -
Ssu2g3174 1142 ProSiteProfiles UmuC domain profile. 400 581 IPR001126 GO:0006281
Ssu2g3174 1142 MobiDBLite consensus disorder prediction 307 341 - -
Ssu2g3174 1142 MobiDBLite consensus disorder prediction 230 258 - -
Ssu2g3174 1142 Pfam impB/mucB/samB family 403 549 IPR001126 GO:0006281
Ssu2g3174 1142 SMART BRCT_7 100 179 IPR001357 -
Ssu2g3174 1142 Pfam impB/mucB/samB family C-terminal domain 637 758 IPR017961 GO:0003684|GO:0006281
Ssu2g3174 1142 CDD PolY_Rev1 351 751 - -
Ssu2g3174 1142 Pfam BRCT domain, a BRCA1 C-terminus domain 100 187 IPR001357 -
Ssu2g3174 1142 CDD BRCT_Rev1 102 189 - -
Ssu2g3174 1142 MobiDBLite consensus disorder prediction 232 248 - -
Ssu2g3174 1142 PIRSF REV1 18 987 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Ssu2g3174 1142 Gene3D - 572 626 - -
Ssu2g3174 1142 MobiDBLite consensus disorder prediction 285 341 - -
Ssu2g3174 1142 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 636 749 IPR036775 GO:0003684|GO:0006281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3174 K03515 - gmx:100778409 1952.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3174 2 94032569 94048769 Ssu2g3174 2 94032569 94048769 ECH