Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3170 ATGGCTCTGTCTTTTGGGCTCCTCTCTTCCATTCTCCCACCAGAAACTCACACTCTTACTTTGAGGCCTCTTCccctttctccttctccttctggGTTGCGCATGGTGCGAACCGTTACCTTTGCCATGGTGTCTCAGTCTGAGGCAGGCACCCGCAAAATCCGTGGTATCATGAAACCCCGGAAAGTGTCCCCGGAGATGCAAGCCCTCGTCGGCGTTCCCGAGATTTCTCGAACCCAAGCGCTCAAACAGATTTGGGCATACATTAAGGACAACAATCTTCAGGACCCTCAAAACAAGAGGACTATAAATTGTGATGAGAAGCTGAAGAAGGTGTTTGCAGGGAGAGATCAAGTTGGTATGCTAGAGATTGCTGGCTTGATTAGCCCTCACTTCCTTAAATGA 405 0.4667 MALSFGLLSSILPPETHTLTLRPLPLSPSPSGLRMVRTVTFAMVSQSEAGTRKIRGIMKPRKVSPEMQALVGVPEISRTQALKQIWAYIKDNNLQDPQNKRTINCDEKLKKVFAGRDQVGMLEIAGLISPHFLK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3170 134 SMART swib_2 57 134 IPR019835 -
Ssu2g3170 134 Gene3D SWIB/MDM2 domain 51 134 IPR036885 -
Ssu2g3170 134 ProSiteProfiles SWIB/MDM2 domain profile. 56 134 IPR003121 -
Ssu2g3170 134 PANTHER EXPRESSED PROTEIN-RELATED 16 133 - -
Ssu2g3170 134 CDD SWIB-MDM2_like 61 132 - -
Ssu2g3170 134 Pfam SWIB/MDM2 domain 59 132 IPR003121 -
Ssu2g3170 134 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 16 133 - -
Ssu2g3170 134 SUPERFAMILY SWIB/MDM2 domain 52 134 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3170 Ssu-Chr2 93970335 93972449 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ssu2g3170 SWIB 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3170 - - lja:Lj1g3v0050930.1 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3170 2 93970335 93972449 Ssu2g3170 2 93970335 93972449 ECH