Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3166 atgttatgttatgttatgttaATGTTGATGGGTGAAGAGGCCAAGAAATCGAATCCAAAACTAACACTATTGCCTCTCATAGCTCTAATCTTCTATGAAGTATCTGGAGGTCCTTTTGGTGTAGAGGATTCGGTGAGGGATGGAGGTGGTCCTCTTCTCTCTTTGCTTGGATTCTTCATTTTCCCTCTCATATGGAGTCTACCAGAAGCTCTGGTTACGGCTGAGCTTGCCACCACCTTCCCTCAAAACGGTGGGTATGTTATTTGGATTTCCTCGGCCTTTGGACCTTTTTGGGGCTTTCAGGGAGGCTTTTGGAAATGGTTCAGTGGGGTCATGGACAATGCTCTTTACCCCGTTTTGTTCCTCGATTACATCAACCATTCCTTCCCCATCACCGCTCGAATCCCTGCTCTTTTAGGGATCACCCTTTCACTAACTTACTTGAACTACCGGGGCCTTCACATTGTCGGCTTCGCTGCTGTTCTCATTGCCCTTTTCTCACTTTCCCCATTTCTCATAATGGCCTTTCTTTCCATTCCACATATCAGGCCCAGGCGGTGGCTCGCTCTAGATTTTAGCAAGGTGGATTGGCCAGGATACTTCAACAGTATGTTCTGGAATTTAAATTATTGGGATAAGGCAAGTACCCTTGCGGGAGAGGTTGAAAATCCAAGTAAAACTTTCCCCAAAGCACTTGTTGGAGGACTAGTTTTGGTGATCTCCTCATACTTGATTCCACTTCTTGCCGGAACAGGTGCTTTGAGCTCCTCGCCAAGTCAGTGGGCAGATGGTTATTTTGCACAAGTGGGCATGTTCATTGGTGGCTCTTGGCTCAAACTCTGGATTCAAGCGGCTGCTGCTATGTCTAACCTGGGCTTGTTTGAAGCAGAGATGAGCAGTGATGCTTTTCAACTTCTAGGGATGAGCAAGATGGGGATGCTTCCAGCTCTATTTGCTTCAAGGTCCAAGTATGGAACGCCCACTGTTAGCATTTTGCTCTCTGCCACTGGAGTTATCTTCTTGTCATGGATGAGCTTTCAGGAAATCATAGAGTTCCTCAATTTCTTATACGCTATAGGAATGCTTCTTGAATTTGCAGCTTTTATAACTTTGAGGTTGAAGAAGCCAAATCTTTATAGACCTTACAGAGTTCCATTGGGAACCTTTTGGGCGACCATGCTTTGTTTGCCTCCTGCTTTATTGCTTATTCTTGTAATGTGCTTGGCTTCTTTGAGAACCTTCTTTGTGAGTGGAGCAGTAATTCTCGTGGGCTTTATCCTGTACCCTCTCTTGGTTCAAGCCAAAGATAAGAATTGGATACTATTTGAAGCAGAGCCACCTTCCGTACATTCCACTGACCAAGAAAACAAGGGTGTTGAGGAAGAAGAATTGTCTTTAATGCAAAGTGATTCTAAACCAAGCTAG 1425 0.4442 MLCYVMLMLMGEEAKKSNPKLTLLPLIALIFYEVSGGPFGVEDSVRDGGGPLLSLLGFFIFPLIWSLPEALVTAELATTFPQNGGYVIWISSAFGPFWGFQGGFWKWFSGVMDNALYPVLFLDYINHSFPITARIPALLGITLSLTYLNYRGLHIVGFAAVLIALFSLSPFLIMAFLSIPHIRPRRWLALDFSKVDWPGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALVGGLVLVISSYLIPLLAGTGALSSSPSQWADGYFAQVGMFIGGSWLKLWIQAAAAMSNLGLFEAEMSSDAFQLLGMSKMGMLPALFASRSKYGTPTVSILLSATGVIFLSWMSFQEIIEFLNFLYAIGMLLEFAAFITLRLKKPNLYRPYRVPLGTFWATMLCLPPALLLILVMCLASLRTFFVSGAVILVGFILYPLLVQAKDKNWILFEAEPPSVHSTDQENKGVEEEELSLMQSDSKPS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3166 474 Pfam Amino acid permease 26 402 IPR002293 GO:0016020|GO:0022857|GO:0055085
Ssu2g3166 474 PIRSF AA_transporter 6 463 - -
Ssu2g3166 474 Gene3D Amino acid/polyamine transporter I 17 444 - -
Ssu2g3166 474 MobiDBLite consensus disorder prediction 447 474 - -
Ssu2g3166 474 PANTHER BNAA05G20530D PROTEIN 15 449 - -
Ssu2g3166 474 PANTHER POLYAMINE TRANSPORTER PUT1 15 449 IPR044566 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3166 Ssu-Chr2 93925493 93927061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3166 10 463 Organic Solute Cotransporters AT3G19553 72.708 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3166 - - gmx:100776817 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3166 2 93925493 93927061 Ssu2g3166 2 93925493 93927061 ECH