Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3165 ATggcttcctcttcttctccgGCGGTGATGAGTGATGAGGAAGGTTTAGGTTTATCTGAAGAAGATTACGACCAAATGTTTGGGTCTGAATCGGGATGGGTGGATGCTCGAACTTCATGCGATCACCTGGCCTCCTTATCCGTCGATCTCACCCACATTCCGCCCCCTCATACTCCCTGCCACAGGTGCCAACACCCGAGTGAAAACTGGTTGTGCCTATCGTGTAAGCAGGTCCTGTGTAGCCGTTTTGTGAACAAGCACATGCTCCACCATTTTCGGGACACAAATCATAGCCTCGCCCTCAGTTTCAGTGATCTCTCCGTCTGGTGTTTCTCCTGCGATGCTTACTTGGATGCTCAACTCATTCCGCAACTGCGCCCTGTTCATCAAGTAGCCTATATATTGAAATTCGGCCAGCCTCCACCACTCCCACCAAATCACCATCAACCTTCATCTACAACTTGA 465 0.4796 MASSSSPAVMSDEEGLGLSEEDYDQMFGSESGWVDARTSCDHLASLSVDLTHIPPPHTPCHRCQHPSENWLCLSCKQVLCSRFVNKHMLHHFRDTNHSLALSFSDLSVWCFSCDAYLDAQLIPQLRPVHQVAYILKFGQPPPLPPNHHQPSSTT 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3165 154 SMART Zf_UBP_1 59 108 IPR001607 GO:0008270
Ssu2g3165 154 SUPERFAMILY RING/U-box 38 128 - -
Ssu2g3165 154 ProSiteProfiles Zinc finger UBP-type profile. 38 139 IPR001607 GO:0008270
Ssu2g3165 154 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 2 143 - -
Ssu2g3165 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 140 IPR013083 -
Ssu2g3165 154 Pfam Zn-finger in ubiquitin-hydrolases and other protein 60 118 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3165 Ssu-Chr2 93917855 93918595 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3165 - - var:108319921 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3165 2 93917855 93918595 Ssu2g3165 2 93917855 93918595 ECH