Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3157 ATGGGAATCCGATCTGTGTTCGATGGCGGTGAGGTGAGAAGGGAATTCTCAAAAAATGGAATTGACACAAAATTCATTCCAATCATATGGAAGCATGTGATTGCGAGTGCGAGTGCGAATGCGAAGGAGCAAAAGGAAGATTGGGAATGGGAGAAACAAGTTCCTTCGTTGCCTTCTTCAGCATACTCTCTCCTTCGTTCCAACTTCTCAACccctctctcttcctctcttcaCTCCGTTTTCCACTCTGCCGACAACCTCACCTCCAAGCTCCTCATCAAGCTCCAGAATGGAGCGTTCGTGGAGGCTGTGATAATGAGGTATGATACTCGTTTGGGTAAATATGCTGGCAAACCCCGTCCCGGTGGTCTAAGAGCAACTCTGTGTATTTCATCTCAGGTTGGATGCAAAATGGGTTGCAAATTCTGTGCCACCGGATCCATGGGATTCAAAACCAACTTATCATCCGGAGAAATTGTGGAACAGCTCGTTCATGCCTCTACTTTCTCACTAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTTTGAACAACTATTCTGCTGTGGTAGAAGCTGTTCGTGTCATGACTGGATGGCCATTTCAATTGTCATTGAAAAAGATTACCATCTCAACGGTTGGCATCATTCATGCTATCAACAAGCTTCATAATGACCTGCCTGGCTTGAACTTAGCAGTCTCACTGCATGCACCAGCCCAAGACATCCGTTGCCAAATAATGCCTGCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGGATTCGCTGCAAGAATATCAAAGGAAAAGTCTgcagaaaatattaattgaatacaTAATGCTTGATGGGGTGAATGACGAAGAGCAGCATGCCCACCAACTGGGAAAACTGTTAGAGACATTTCAAGTGGTAGTGAACTTAATACCTTTCAACTCTATTGGTACCTTGAGTCAATTCAAACCTACTAGTGAGCAGAAAGTagcaaattttcaaaaaattcttagGGGTACCTATAATATTCGAACAACGGTTCGGAAGCAGATGGGTCAGGACATAAGTGGTGCTTGTGGACAATTGGTGGTTAACATATCTGACAAGTCTCTTGGCAATGCAAATCCCCTAACGGACATAGAAGATCTTGTTATTTGA 1149 0.4204 MGIRSVFDGGEVRREFSKNGIDTKFIPIIWKHVIASASANAKEQKEDWEWEKQVPSLPSSAYSLLRSNFSTPLSSSLHSVFHSADNLTSKLLIKLQNGAFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKTNLSSGEIVEQLVHASTFSLIRNVVFMGMGEPLNNYSAVVEAVRVMTGWPFQLSLKKITISTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMDSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNSIGTLSQFKPTSEQKVANFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNISDKSLGNANPLTDIEDLVI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3157 382 PIRSF Cfr 18 374 IPR004383 GO:0006364|GO:0008173
Ssu2g3157 382 PANTHER 23S RRNA METHYLTRANSFERASE 3 372 IPR040072 -
Ssu2g3157 382 Pfam Radical SAM superfamily 131 289 IPR007197 GO:0003824|GO:0051536
Ssu2g3157 382 CDD Radical_SAM 135 336 - -
Ssu2g3157 382 SFLD adenosine C2 methyltransferase (RlmN-like) 54 366 IPR004383 GO:0006364|GO:0008173
Ssu2g3157 382 Gene3D Aldolase class I 75 367 IPR013785 -
Ssu2g3157 382 SUPERFAMILY Radical SAM enzymes 127 312 - -
Ssu2g3157 382 Pfam 4Fe-4S single cluster domain 135 221 - -
Ssu2g3157 382 SFLD methyltransferase (Class A) 54 366 - -
Ssu2g3157 382 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 372 - -
Ssu2g3157 382 ProSiteProfiles Radical SAM core domain profile. 122 351 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3157 Ssu-Chr2 93858387 93862338 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3157 - - ccaj:109814608 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3157 2 93858387 93862338 Ssu2g3157 2 93858387 93862338 ECH