Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3156 ATGGAGGGAACCGAAACGAATGGCGACGGTGTTCGTGCATGGCAATCCTACCACACTGTTTACACAGCCGCCAAAGCAGgAATGGAAGGGGTTGACAAGGAGAAAGTGCAAAGGGTGGTTTATGAAATGAGCAAAGGAtccaaatattttcaaaacgaGGAAAGGAAGGACGCTTTTATTAAGCAGAAAATTGACAACCTGCGAATTCAGTGTGCAAAGCTCACACAAACAGACTTGGCCCATTATCAGaagGTGGCTGATAGAAGAATTGTTGAGCTAGAAGCTTCACGTGACCTTTCAAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCAGTTGAGACTTTAAGTAACCCTACGGTAAAGGGCAAGCCAATGGCTGTTGGGAGCATGTCCATGATATCCACTGCCAACTATGAGGCCCGGAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTCCCAACAGATTTCAAGAAGTATACTTATTACAGTGATTTGACCAGAAAAGTTTTTCGGAGGTATGATCCCAATTTCATTGCTGGTAGCCTGGATGAAGCATACCTTGATATAACTGAAGTTTGCAAAGAAAGGAATGTCAAAAGTGAAGAAATTGCCCAAGAACTCAGAGCTAGTGTTTGTGAAGAGACTGGTCTCACATGTAGTGCTGGAATGGCACCAAATCGCTTACTTGCTAAGGTTTGTTCAGACATTAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACTGAACATCTTTTGAAGGGAGTTTTTGGAATTAACACTTGTGAGCAGATGCTGGAGAAGAGTAGCTACCTTTGTGCACTTTTCTCTCAGGCAACAGCAGATTTTTTTTGCTCTGTCGGTTTAGGTCTTGGGCAGACAGATTCTCCCCAAGTAAGATATCGGAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACCGAGGATGAAGTGCTGTTGCATAAAAGATTGGTGGAGCTTGCTGAAATGCTATCAGCTGACATGCAAAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACTAGAGCTGTGACTTTACAAAAGTACATCAGCTCGAGTGAGGATATTTTGAAGCATGCCAGAAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTAAGATTGATAGGCCTTAGAGTATCACAGTTTATTGGAGACAAGTGTAGTGCTACGTCTGATCCTACACAGAAGACTATTACCAACTTCATTACTTTGGGAGATGTCAATAGAAATTGTAGTTCTTTTCCAGATGTTGCAGATCATGACTTTGTCAGTAATGCAGAAACTGATCTTTCCATTGACAGTCGGCAGACAAGTCAGCTTGATTGGAGAGGTCCTTTTGATGGTAATCATTTGTCAGACATAGATTACCAAAGCTGCACTGTCTGGAAAAATGATGGTGTAGAAgagGTGCAAACATCTAGTAATGATGCTACAAGTTCTCGCTACAGTGGATTTACAGAAGTGCTGGGATCAACTTCTTTGCAGGGGCAGTTTGAAGGCATAAATGTGAAGAATGGGTCTAATCTCCTGGAGGATGAGAGACTTAATTCTTGTTGTCAGGAGAAGACAATGTTATGGTTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTGCCTCCAAGTTTTGTTGAGGAAAGATTGGAGCACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAAACGTCTCTTCCGAGTCAAAGTCGGGGTCAGAGCCAGAATGATCGAATAACTAGACAAAGCAAATCCAAAAGGCAAAAGTTGTCGCAGAAAGAAGGCAGGTATACAcccattgattatttttttgttaaaaaataa 2001 0.4098 MEGTETNGDGVRAWQSYHTVYTAAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKDAFIKQKIDNLRIQCAKLTQTDLAHYQKVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTVKGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFRRYDPNFIAGSLDEAYLDITEVCKERNVKSEEIAQELRASVCEETGLTCSAGMAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHLLKGVFGINTCEQMLEKSSYLCALFSQATADFFCSVGLGLGQTDSPQVRYRKSISNERTFSATEDEVLLHKRLVELAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHARKLLKAELPISVRLIGLRVSQFIGDKCSATSDPTQKTITNFITLGDVNRNCSSFPDVADHDFVSNAETDLSIDSRQTSQLDWRGPFDGNHLSDIDYQSCTVWKNDGVEEVQTSSNDATSSRYSGFTEVLGSTSLQGQFEGINVKNGSNLLEDERLNSCCQEKTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESRIHQTSLPSQSRGQSQNDRITRQSKSKRQKLSQKEGRYTPIDYFFVKK 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3156 666 ProSiteProfiles UmuC domain profile. 103 283 IPR001126 GO:0006281
Ssu2g3156 666 Hamap DNA polymerase IV [dinB]. 100 452 IPR022880 GO:0003887
Ssu2g3156 666 CDD PolY_Pol_IV_kappa 104 436 IPR022880 GO:0003887
Ssu2g3156 666 PIRSF DNA_pol_eta 459 666 - -
Ssu2g3156 666 PIRSF DNA_pol_eta 215 459 - -
Ssu2g3156 666 PIRSF DNA_pol_eta 95 217 - -
Ssu2g3156 666 Gene3D - 259 332 - -
Ssu2g3156 666 Pfam impB/mucB/samB family 106 250 IPR001126 GO:0006281
Ssu2g3156 666 MobiDBLite consensus disorder prediction 617 653 - -
Ssu2g3156 666 Gene3D - 120 168 - -
Ssu2g3156 666 Gene3D - 337 442 IPR036775 GO:0003684|GO:0006281
Ssu2g3156 666 SUPERFAMILY DNA/RNA polymerases 77 330 IPR043502 -
Ssu2g3156 666 MobiDBLite consensus disorder prediction 620 638 - -
Ssu2g3156 666 Gene3D - 108 258 IPR043128 -
Ssu2g3156 666 PANTHER DNA POLYMERASE KAPPA 7 645 - -
Ssu2g3156 666 Gene3D - 21 107 - -
Ssu2g3156 666 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 337 434 IPR036775 GO:0003684|GO:0006281
Ssu2g3156 666 ProSiteProfiles Zinc finger UBZ3-type profile. 579 616 IPR041298 -
Ssu2g3156 666 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 7 645 - -
Ssu2g3156 666 Pfam impB/mucB/samB family C-terminal domain 339 441 IPR017961 GO:0003684|GO:0006281
Ssu2g3156 666 Pfam Ubiquitin-Binding Zinc Finger 583 616 IPR041298 -
Ssu2g3156 666 MobiDBLite consensus disorder prediction 639 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3156 Ssu-Chr2 93846417 93850723 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3156 K03511 - gmx:100816973 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3156 2 93846417 93850723 Ssu2g3156 2 93846417 93850723 ECH