Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2960 ATGAAACTGAAACATGAAGAATCATCGCCCATCAAATTCCAAATATCAAGGCAACAATGCAATAGCAGCATTTTTGGCCTCTCCTTCTCCTTCATACTCTCCCTATGGTGCCTCCTCTTCTTCTACATCAAGCTTCGTCTCGTTCACGGCACCGGAGGTCGAGCTATGTTAGAGTTCAATGAATCGGGTAGCTCCAACAGTCTTAGTCAGAAACTTGCAAAACCCTCGTACTCACTTCCCGAAACAACTAGTTTAGAACATGTGTTTTGGCATGTTTTAGGTAATGGTAGTAATTTGGTGTGCAAACTACAACCTCCACAAGAGGAAAACAAACTGCAACAAAATCCTGATGAGAAACTTCATCACAATTTTGATGAATTCCAAAACATGGCAGCAACGCAGGAAAAAACCACGGGCATGGACTCTGAGCTTGTTAACGTAACTCACAGGCTTGAACCTGACGGTTCAGTGTACAACTATGCCTCTGAGTCCAAAGGTGCAAAGGTGGTGGCTCATAATAAGGAGGCCAAGGGTGCCAAAAATATACTCGGGAAGGATCATGACAAGTACCTGAGAAACCCTTGTTCTGTTGAAGGAAAATTTGTTGTTATTGAGCTTTCAGAAGAGACTCTGGTTGATTCTGTGAAGATTGCAAATTTTGAGCATTATTCTTCTAACTTCAAGGAATTTGATTTGGCTGGTAGTTTGAGCTATCCAACTGAAGAATGGAGCATGCTGGGAAACTTTATTGCCGCCAATGTCAAGCATGCACAGATCTTTAAGCTGCCTGAACCCAAATGGGTAAGGTATTTAAAGTTGAGCTTGCTTAGTCATTATGGATCTGAGTTTTACTGCACACTGAGTGTTGTAGAAGTTTATGGGATCAATGCAATAGAGCGGATGCTTAAGGATCTAATTGTTGCTTCTGTGGGATCTATTGCTGATAAGTTGCCTGCGCATAATATCAGTGACATCCCTTTGAATTCAGAAGCTGGTCAAATTGAcagaaatggaaaaaaagttGATACTAAGAATGACACTGTGGCTGCTGAGATATCAAGCAATGATACCACTCAAGAGTTTGACGCAGAAGGGATGAAAACTACAATGACTGTGAACTTGATTCCCAATCCTGTAATAGAACTTAAGCAACAGCTAAATGGTAGGGTAGCTGGTGACACTGTTCTGAAGATTTTGATGCAGAAAGTGAGGTCAGTGGAGGTGAACTTATCTGCCCTGGAGGATTACATCAAAGAATTGAACAGGAGACAAGGGGTTAAAATACCGGATCTTGAGAAAGAGTTGTCCAGATTATCAGAAAGCCTTGGACAAAGCAAGTCAGAGATCAAAGATCTCTGGCAGTGGAACACAAATATGGAAAAAGGAATATCTGAGGTTGAGTCTTGGAAAGATGCTGTCTCATCTCAACTTAATGAATTAGCCAGAGAAAATAGCATGCTAAGATCAGATGTTCGGAAGGTTGCAAGTAATCAAGCAAATATGGAAACCAAAGAATTTGCTGTGTTAGCAACGAGTCTTGTTTTTGTATGCCTTGCAGTTGTCAAGATAATTTCAGTACACATGTTGACGTTTTCTGCATCATACAGTGCAGATAAGGTGCGCCAGACAATTAGAGGATGGGTTACATTATTTGTTTGCTGTAGTGTAACAATATTCGTTATCTTGTTTTATAGCTAG 1698 0.4046 MKLKHEESSPIKFQISRQQCNSSIFGLSFSFILSLWCLLFFYIKLRLVHGTGGRAMLEFNESGSSNSLSQKLAKPSYSLPETTSLEHVFWHVLGNGSNLVCKLQPPQEENKLQQNPDEKLHHNFDEFQNMAATQEKTTGMDSELVNVTHRLEPDGSVYNYASESKGAKVVAHNKEAKGAKNILGKDHDKYLRNPCSVEGKFVVIELSEETLVDSVKIANFEHYSSNFKEFDLAGSLSYPTEEWSMLGNFIAANVKHAQIFKLPEPKWVRYLKLSLLSHYGSEFYCTLSVVEVYGINAIERMLKDLIVASVGSIADKLPAHNISDIPLNSEAGQIDRNGKKVDTKNDTVAAEISSNDTTQEFDAEGMKTTMTVNLIPNPVIELKQQLNGRVAGDTVLKILMQKVRSVEVNLSALEDYIKELNRRQGVKIPDLEKELSRLSESLGQSKSEIKDLWQWNTNMEKGISEVESWKDAVSSQLNELARENSMLRSDVRKVASNQANMETKEFAVLATSLVFVCLAVVKIISVHMLTFSASYSADKVRQTIRGWVTLFVCCSVTIFVILFYS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2960 565 Coils Coil 403 423 - -
Ssu2g2960 565 Gene3D - 169 305 - -
Ssu2g2960 565 Pfam Sad1 / UNC-like C-terminal 172 294 IPR012919 -
Ssu2g2960 565 ProSiteProfiles SUN domain profile. 137 297 IPR012919 -
Ssu2g2960 565 Coils Coil 428 448 - -
Ssu2g2960 565 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 56 564 - -
Ssu2g2960 565 SUPERFAMILY Galactose-binding domain-like 196 293 IPR008979 -
Ssu2g2960 565 PANTHER MEMBRANE PROTEIN CH1 RELATED 56 564 IPR045120 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2960 Ssu-Chr2 91088275 91090976 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2960 - - gmx:102668828 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2960 2 91088275 91090976 Ssu2g2960 2 91088275 91090976 ECH