Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2935 ATGGCGAAGGAGTTGTTGACACTTGATAATGGCACAACCTGCACATCCTGGAACTACTCTGGCACCAGACTCGCTGCGGGTTCCGCCGATGGCACGCTTTCAATCTTCGATTCCCGCGACCCACCTTCTTCTTCCTCCCTCCATTCTACTTTCAAATCTAGGGTTGTTGAAGGAAACATCGTGAAGATTGTTTGGGTTCCGCCAGAATACGGTGATGCAGTTGCGTGCATTTCTGCCGATGGAATTGCGTCATTGTGGGAGGAGGTTGCAGAAGATTCACGGTCTCTTCAGTGGAAGGTTTGCAAAAGCTTTGGAAGCAATTCAAACAAAGTCCTTGATGTTCAATTTGGAATCTCTTTGTCTAGTTTGAAAATGGTTGCTGCATATTCAGATGGTAATGTAAGAGTTTTTGAGCTCTTGGATCCCTTGGAACTGCAAAACTGGCAGCTTCAGGCTGaatttcaaaatgttattgaGTCAGTGTCTGCATTTGGAAAGGCTTCGTGCCTCTCTGCATCCATATCTTGGAATCCACAAAAAGGTGGAAATCAGGAATCCAGCTTCCTTATAGGTTTTAATTCAAATACACCAGAGCTTAATTCTTCTAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCGGTGGCAGAATTGGCACTGCCTGAGGACAAGGGTGATCAGGTTTATGCTGTTGCATGGGCACCAAATATTGGCAGACCGTATGAGATCATTGCAGTTGCAACTCACAAGGGACTTGCAATATGGTATCTTGGATTGAACCCTGAAAATAATGGAAGGCTCCCAGTAGAGAGAGTTGCACTACTGGCAGGTCACGAGGGCATGGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACGTTGGCTTCTACAGGTCATGATGGAATGGTCCGATTATGGCAGTCTAATCTCGATGGCGTTTGGCATCAGCAAGCTGCATTTGAACCCACTTCTTAG 981 0.4557 MAKELLTLDNGTTCTSWNYSGTRLAAGSADGTLSIFDSRDPPSSSSLHSTFKSRVVEGNIVKIVWVPPEYGDAVACISADGIASLWEEVAEDSRSLQWKVCKSFGSNSNKVLDVQFGISLSSLKMVAAYSDGNVRVFELLDPLELQNWQLQAEFQNVIESVSAFGKASCLSASISWNPQKGGNQESSFLIGFNSNTPELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIGRPYEIIAVATHKGLAIWYLGLNPENNGRLPVERVALLAGHEGMVWQMEWDMSGMTLASTGHDGMVRLWQSNLDGVWHQQAAFEPTS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2935 326 SMART WD40_4 1 37 IPR001680 GO:0005515
Ssu2g2935 326 SMART WD40_4 270 309 IPR001680 GO:0005515
Ssu2g2935 326 SMART WD40_4 44 87 IPR001680 GO:0005515
Ssu2g2935 326 SMART WD40_4 97 138 IPR001680 GO:0005515
Ssu2g2935 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 309 IPR001680 GO:0005515
Ssu2g2935 326 PANTHER NUCLEOPORIN SEH1 6 325 IPR037597 GO:1904263
Ssu2g2935 326 Gene3D - 9 323 IPR015943 GO:0005515
Ssu2g2935 326 Pfam WD domain, G-beta repeat 13 37 IPR001680 GO:0005515
Ssu2g2935 326 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Ssu2g2935 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Ssu2g2935 326 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 6 325 IPR037363 GO:0005198
Ssu2g2935 326 SUPERFAMILY WD40 repeat-like 9 310 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2935 K14299 - gmx:100780788 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2935 2 90734356 90737058 Ssu2g2935 2 90734356 90737058 ECH